| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTASGFTFSSYGLGWFRQAPGQEREAVAAINSNGGSTYYADSVKGRFTISRDNAKNTVTLQMNNLKPEDTAIYYCASGDYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:15)
[INFO] Main: Simulation completed successfully. (00:01:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4898 | |
| 2 | V | A | -0.8381 | |
| 3 | Q | A | -0.9156 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1159 | |
| 6 | E | A | 0.0302 | |
| 7 | S | A | -0.6723 | |
| 8 | G | A | -1.3407 | |
| 9 | G | A | -1.2190 | |
| 10 | G | A | -0.9458 | |
| 11 | S | A | -0.7274 | |
| 12 | V | A | -0.8536 | |
| 13 | Q | A | -1.7985 | |
| 14 | A | A | -1.9415 | |
| 15 | G | A | -1.8426 | |
| 16 | G | A | -1.4046 | |
| 17 | S | A | -1.5491 | |
| 18 | L | A | -1.3085 | |
| 19 | R | A | -2.2793 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5932 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.2700 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8592 | |
| 26 | G | A | -0.9955 | |
| 27 | F | A | -0.2769 | |
| 28 | T | A | -0.0851 | |
| 29 | F | A | 0.0000 | |
| 30 | S | A | -0.7722 | |
| 31 | S | A | -0.2368 | |
| 32 | Y | A | 0.3082 | |
| 33 | G | A | -0.4984 | |
| 34 | L | A | 0.0000 | |
| 35 | G | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | F | A | -0.2043 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.2128 | |
| 40 | A | A | -1.9538 | |
| 41 | P | A | -1.3263 | |
| 42 | G | A | -1.7964 | |
| 43 | Q | A | -3.0355 | |
| 44 | E | A | -3.6920 | |
| 45 | R | A | -3.3125 | |
| 46 | E | A | -2.4663 | |
| 47 | A | A | -0.5422 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.2650 | |
| 51 | I | A | 0.0000 | |
| 52 | N | A | -1.0316 | |
| 53 | S | A | -1.0775 | |
| 54 | N | A | -1.9150 | |
| 55 | G | A | -1.6157 | |
| 56 | G | A | -1.2201 | |
| 57 | S | A | -0.7078 | |
| 58 | T | A | 0.1210 | |
| 59 | Y | A | 0.6746 | |
| 60 | Y | A | -0.2974 | |
| 61 | A | A | -1.0733 | |
| 62 | D | A | -2.2776 | |
| 63 | S | A | -1.6895 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.4362 | |
| 66 | G | A | -1.8600 | |
| 67 | R | A | -1.6510 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8149 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6707 | |
| 72 | R | A | -1.4384 | |
| 73 | D | A | -1.8728 | |
| 74 | N | A | -1.9693 | |
| 75 | A | A | -1.4193 | |
| 76 | K | A | -2.3215 | |
| 77 | N | A | -1.7236 | |
| 78 | T | A | -1.1034 | |
| 79 | V | A | 0.0000 | |
| 80 | T | A | -0.8874 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5370 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9354 | |
| 85 | N | A | -2.3074 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.6334 | |
| 88 | P | A | -1.8940 | |
| 89 | E | A | -2.3125 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.1459 | |
| 92 | A | A | 0.0000 | |
| 93 | I | A | -0.4887 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1080 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | S | A | 0.0000 | |
| 99 | G | A | -0.9077 | |
| 100 | D | A | -1.5529 | |
| 101 | Y | A | -0.2139 | |
| 102 | W | A | 0.1296 | |
| 103 | G | A | 0.0664 | |
| 104 | Q | A | -0.8469 | |
| 105 | G | A | -0.4369 | |
| 106 | T | A | -0.7131 | |
| 107 | Q | A | -1.3003 | |
| 108 | V | A | 0.0000 | |
| 109 | T | A | -1.0005 | |
| 110 | V | A | 0.0000 | |
| 111 | S | A | -1.2652 | |
| 112 | S | A | -0.9223 |