Project name: query_structure

Status: done

Started: 2026-03-16 20:32:22
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWHTATNSFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVDVDYNPTGRPVSSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:55)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:56)
Show buried residues

Minimal score value
-3.0281
Maximal score value
1.8151
Average score
-0.7435
Total score value
-71.3807

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.3805
2 P A -0.3762
3 A A -0.8357
4 P A 0.0000
5 K A -1.9034
6 N A -1.5804
7 L A -0.2724
8 V A 1.0871
9 V A 0.6698
10 S A -0.6007
11 R A -2.0003
12 V A -0.9878
13 T A -1.7648
14 E A -3.0281
15 D A -2.6705
16 S A -2.0368
17 A A 0.0000
18 R A -1.1840
19 L A 0.0000
20 S A -0.5005
21 W A 0.0000
22 H A -1.8703
23 T A -1.3893
24 A A -0.6833
25 T A -0.7617
26 N A -1.8600
27 S A -1.2186
28 F A 0.0000
29 D A -2.1860
30 S A -1.0115
31 F A 0.0000
32 L A 0.7321
33 I A 0.0000
34 Q A 0.5196
35 Y A 0.3818
36 Q A -0.8741
37 E A -1.8398
38 S A -1.5254
39 E A -2.7107
40 K A -2.3575
41 V A -0.0934
42 G A -1.0637
43 E A -1.5276
44 A A -0.3320
45 I A 0.8894
46 V A 1.6429
47 L A 1.2848
48 T A 0.4902
49 V A 0.0000
50 P A -1.1085
51 G A 0.0000
52 S A -1.5152
53 E A -1.7942
54 R A -1.1985
55 S A -0.7804
56 Y A -0.7344
57 D A -1.6555
58 L A 0.0000
59 T A -1.4146
60 G A -1.4830
61 L A 0.0000
62 K A -3.0084
63 P A -2.6041
64 G A -1.8665
65 T A -2.2360
66 E A -1.9758
67 Y A 0.0000
68 T A 0.0147
69 V A 0.0000
70 S A 0.2618
71 I A 0.0000
72 Y A 0.0224
73 G A 0.0000
74 V A -0.2424
75 D A -0.7194
76 V A -0.7740
77 D A -1.6313
78 Y A -0.0863
79 N A -0.9776
80 P A -0.9181
81 T A -1.1338
82 G A -1.5764
83 R A -2.1226
84 P A -1.0346
85 V A -0.0674
86 S A -0.0420
87 S A 0.0000
88 N A -1.1828
89 P A -0.7211
90 L A -0.5305
91 S A 0.1360
92 A A 1.1880
93 I A 1.8151
94 F A 0.0000
95 T A -0.7952
96 T A -1.9198
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Laboratory of Theory of Biopolymers 2018