| Chain sequence(s) |
A: LPAPKNLVVSRVTEDSARLSWHTATNSFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGTEYTVSIYGVDVDYNPTGRPVSSNPLSAIFTT
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:55)
[INFO] Main: Simulation completed successfully. (00:00:56)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | L | A | 0.3805 | |
| 2 | P | A | -0.3762 | |
| 3 | A | A | -0.8357 | |
| 4 | P | A | 0.0000 | |
| 5 | K | A | -1.9034 | |
| 6 | N | A | -1.5804 | |
| 7 | L | A | -0.2724 | |
| 8 | V | A | 1.0871 | |
| 9 | V | A | 0.6698 | |
| 10 | S | A | -0.6007 | |
| 11 | R | A | -2.0003 | |
| 12 | V | A | -0.9878 | |
| 13 | T | A | -1.7648 | |
| 14 | E | A | -3.0281 | |
| 15 | D | A | -2.6705 | |
| 16 | S | A | -2.0368 | |
| 17 | A | A | 0.0000 | |
| 18 | R | A | -1.1840 | |
| 19 | L | A | 0.0000 | |
| 20 | S | A | -0.5005 | |
| 21 | W | A | 0.0000 | |
| 22 | H | A | -1.8703 | |
| 23 | T | A | -1.3893 | |
| 24 | A | A | -0.6833 | |
| 25 | T | A | -0.7617 | |
| 26 | N | A | -1.8600 | |
| 27 | S | A | -1.2186 | |
| 28 | F | A | 0.0000 | |
| 29 | D | A | -2.1860 | |
| 30 | S | A | -1.0115 | |
| 31 | F | A | 0.0000 | |
| 32 | L | A | 0.7321 | |
| 33 | I | A | 0.0000 | |
| 34 | Q | A | 0.5196 | |
| 35 | Y | A | 0.3818 | |
| 36 | Q | A | -0.8741 | |
| 37 | E | A | -1.8398 | |
| 38 | S | A | -1.5254 | |
| 39 | E | A | -2.7107 | |
| 40 | K | A | -2.3575 | |
| 41 | V | A | -0.0934 | |
| 42 | G | A | -1.0637 | |
| 43 | E | A | -1.5276 | |
| 44 | A | A | -0.3320 | |
| 45 | I | A | 0.8894 | |
| 46 | V | A | 1.6429 | |
| 47 | L | A | 1.2848 | |
| 48 | T | A | 0.4902 | |
| 49 | V | A | 0.0000 | |
| 50 | P | A | -1.1085 | |
| 51 | G | A | 0.0000 | |
| 52 | S | A | -1.5152 | |
| 53 | E | A | -1.7942 | |
| 54 | R | A | -1.1985 | |
| 55 | S | A | -0.7804 | |
| 56 | Y | A | -0.7344 | |
| 57 | D | A | -1.6555 | |
| 58 | L | A | 0.0000 | |
| 59 | T | A | -1.4146 | |
| 60 | G | A | -1.4830 | |
| 61 | L | A | 0.0000 | |
| 62 | K | A | -3.0084 | |
| 63 | P | A | -2.6041 | |
| 64 | G | A | -1.8665 | |
| 65 | T | A | -2.2360 | |
| 66 | E | A | -1.9758 | |
| 67 | Y | A | 0.0000 | |
| 68 | T | A | 0.0147 | |
| 69 | V | A | 0.0000 | |
| 70 | S | A | 0.2618 | |
| 71 | I | A | 0.0000 | |
| 72 | Y | A | 0.0224 | |
| 73 | G | A | 0.0000 | |
| 74 | V | A | -0.2424 | |
| 75 | D | A | -0.7194 | |
| 76 | V | A | -0.7740 | |
| 77 | D | A | -1.6313 | |
| 78 | Y | A | -0.0863 | |
| 79 | N | A | -0.9776 | |
| 80 | P | A | -0.9181 | |
| 81 | T | A | -1.1338 | |
| 82 | G | A | -1.5764 | |
| 83 | R | A | -2.1226 | |
| 84 | P | A | -1.0346 | |
| 85 | V | A | -0.0674 | |
| 86 | S | A | -0.0420 | |
| 87 | S | A | 0.0000 | |
| 88 | N | A | -1.1828 | |
| 89 | P | A | -0.7211 | |
| 90 | L | A | -0.5305 | |
| 91 | S | A | 0.1360 | |
| 92 | A | A | 1.1880 | |
| 93 | I | A | 1.8151 | |
| 94 | F | A | 0.0000 | |
| 95 | T | A | -0.7952 | |
| 96 | T | A | -1.9198 |