Project name: 1.P1D1.pdb

Status: done

Started: 2026-03-19 12:24:41
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Chain sequence(s) H: QVQLVESGGGLVQAGGSLRLSCAASGRTFPTYGIGWFRQAPGKEREFVAAINWSGAMTRYADSVKGRLTISRDNAKNTVYLQMNSLKPEDTAVYYCAAAVTAVIASNYDYWGQGTQVAVSS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:57)
Show buried residues

Minimal score value
-3.1562
Maximal score value
1.9126
Average score
-0.6579
Total score value
-79.6114

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.8676
2 V H 0.0000
3 Q H -0.9936
4 L H 0.0000
5 V H 1.2778
6 E H 0.1965
7 S H -0.4885
8 G H -1.0408
9 G H -0.6707
11 G H 0.0061
12 L H 1.0795
13 V H 0.0207
14 Q H -1.2672
15 A H -1.5643
16 G H -1.5151
17 G H -1.0509
18 S H -1.3093
19 L H -0.7017
20 R H -1.4686
21 L H 0.0000
22 S H -0.1973
23 C H 0.0000
24 A H -0.0827
25 A H 0.0000
26 S H -1.2583
27 G H -1.8716
28 R H -2.4355
29 T H -1.0794
30 F H 0.0000
35 P H -0.6502
36 T H 0.0726
37 Y H 0.0000
38 G H 0.0000
39 I H 0.0000
40 G H 0.0000
41 W H 0.0000
42 F H 0.0000
43 R H 0.0000
44 Q H -1.6422
45 A H -1.6218
46 P H -1.2379
47 G H -1.7494
48 K H -2.8522
49 E H -3.1562
50 R H -2.2523
51 E H -1.3878
52 F H -0.5105
53 V H 0.0000
54 A H 0.0000
55 A H 0.0000
56 I H 0.0000
57 N H 0.0000
58 W H 0.3215
59 S H -0.1807
62 G H -0.2901
63 A H -0.0884
64 M H -0.0536
65 T H -0.6256
66 R H -1.8555
67 Y H -1.5186
68 A H -1.4676
69 D H -2.5634
70 S H -1.7349
71 V H 0.0000
72 K H -2.6346
74 G H -1.7993
75 R H -1.9618
76 L H 0.0000
77 T H -1.0471
78 I H 0.0000
79 S H -0.3705
80 R H -0.9955
81 D H -1.8262
82 N H -1.6679
83 A H -1.4394
84 K H -2.3907
85 N H -1.8923
86 T H -0.9959
87 V H 0.0000
88 Y H -0.3678
89 L H 0.0000
90 Q H -1.1091
91 M H 0.0000
92 N H -2.0411
93 S H -1.6208
94 L H 0.0000
95 K H -2.5868
96 P H -1.9090
97 E H -2.3384
98 D H 0.0000
99 T H -0.8830
100 A H 0.0000
101 V H -0.4347
102 Y H 0.0000
103 Y H -0.0711
104 C H 0.0000
105 A H 0.0000
106 A H 0.0000
107 A H 0.0000
108 V H 1.0374
109 T H 0.7917
110 A H 1.0703
111 V H 1.0603
112A I H 1.9126
112 A H 0.6570
113 S H -0.4076
114 N H -1.0988
115 Y H 0.0000
116 D H -1.2393
117 Y H -0.5525
118 W H 0.0853
119 G H 0.0000
120 Q H -0.8934
121 G H -0.4843
122 T H -0.7113
123 Q H -1.1111
124 V H 0.0000
125 A H -0.2639
126 V H 0.0000
127 S H -0.8420
128 S H -0.9115
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Laboratory of Theory of Biopolymers 2018