Project name: 3111M

Status: done

Started: 2025-06-22 07:06:02
Settings
Chain sequence(s) A: FDFDFDFDFDFDFDFDFDFDFDFDFDFDFDFDFDFDFDFD
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:07)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:07)
Show buried residues

Minimal score value
-1.452
Maximal score value
1.9063
Average score
0.2529
Total score value
10.1152

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 1.4645
2 D A -0.3261
3 F A 0.7349
4 D A -1.2733
1 F A 1.9063
2 D A -0.1989
3 F A 0.9287
4 D A -1.2733
1 F A 1.9063
2 D A -0.1989
3 F A 0.9287
4 D A -1.2733
1 F A 1.7125
2 D A -0.1989
3 F A 0.7349
4 D A -1.2733
1 F A 1.7125
2 D A -0.1989
3 F A 0.7349
4 D A -1.2733
1 F A 1.7125
2 D A -0.1989
3 F A 0.7349
4 D A -1.2733
1 F A 1.7125
2 D A -0.1989
3 F A 0.7349
4 D A -1.4520
1 F A 1.7125
2 D A -0.1989
3 F A 0.7349
4 D A -1.4520
1 F A 1.7125
2 D A -0.1989
3 F A 0.7349
4 D A -1.2733
1 F A 1.7125
2 D A -0.1989
3 F A 0.8207
4 D A -1.0385
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Laboratory of Theory of Biopolymers 2018