Project name: query_structure

Status: done

Started: 2026-03-17 00:26:31
Settings
Chain sequence(s) A: QVQLQESGGGLVQAGGSLRLSCAASGYISDAYYMGWYRQAPGKEREFVATITHGTNTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVFDISFLVFPWSHDYWGQGTQVTVSSLE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:42)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:43)
Show buried residues

Minimal score value
-3.1613
Maximal score value
4.0754
Average score
-0.5261
Total score value
-65.2372

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2944
2 V A -0.6241
3 Q A -1.6481
4 L A 0.0000
5 Q A -1.6939
6 E A 0.0000
7 S A -1.0844
8 G A -1.0192
9 G A -0.8208
10 G A -0.0597
11 L A 1.0515
12 V A 0.2023
13 Q A -0.9954
14 A A -1.2008
15 G A -1.1216
16 G A -0.8891
17 S A -1.2264
18 L A -1.0299
19 R A -2.1217
20 L A 0.0000
21 S A -0.8482
22 C A 0.0000
23 A A -1.1850
24 A A -0.7163
25 S A -0.7543
26 G A -0.1263
27 Y A 0.4284
28 I A 0.0000
29 S A -1.2608
30 D A -1.6963
31 A A -0.6778
32 Y A -0.1292
33 Y A -0.1098
34 M A 0.0000
35 G A 0.0000
36 W A 0.0000
37 Y A 0.0106
38 R A 0.0000
39 Q A -1.7712
40 A A -1.8201
41 P A -1.2897
42 G A -1.7580
43 K A -2.8473
44 E A -3.1613
45 R A -2.3015
46 E A -1.0946
47 F A 0.2363
48 V A 0.0000
49 A A 0.0000
50 T A 0.4505
51 I A 0.0000
52 T A 0.0000
53 H A -1.6079
54 G A -1.0675
55 T A -1.0169
56 N A -1.3123
57 T A -0.1439
58 Y A 0.6888
59 Y A -0.0659
60 A A -0.8545
61 D A -2.2216
62 S A -1.7283
63 V A 0.0000
64 K A -2.4476
65 G A -1.7801
66 R A -1.4972
67 F A 0.0000
68 T A -0.7084
69 I A 0.0000
70 S A -0.6470
71 R A -1.2506
72 D A -1.7901
73 N A -2.0564
74 A A -1.3784
75 K A -2.1799
76 N A -1.4644
77 T A 0.0000
78 V A 0.0000
79 Y A -0.6475
80 L A 0.0000
81 Q A -1.2078
82 M A 0.0000
83 N A -1.4367
84 S A -1.2269
85 L A 0.0000
86 K A -2.2650
87 P A -1.6448
88 E A -2.3030
89 D A 0.0000
90 T A -0.8950
91 A A 0.0000
92 V A -0.6005
93 Y A 0.0000
94 Y A -0.3949
95 C A 0.0000
96 A A 0.0000
97 V A 0.0000
98 F A -0.0629
99 D A -0.1416
100 I A 1.8469
101 S A 2.3280
102 F A 3.5588
103 L A 3.8122
104 V A 4.0754
105 F A 3.4785
106 P A 1.3570
107 W A 1.2861
108 S A 0.0189
109 H A -0.6958
110 D A -0.9544
111 Y A -0.5063
112 W A -0.1990
113 G A -0.9082
114 Q A -1.5448
115 G A -1.0010
116 T A 0.0000
117 Q A -1.1786
118 V A 0.0000
119 T A -0.2675
120 V A 0.0000
121 S A -0.5637
122 S A -0.7510
123 L A 0.2015
124 E A -1.2759
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Laboratory of Theory of Biopolymers 2018