Project name: query_structure

Status: done

Started: 2026-03-16 23:23:51
Settings
Chain sequence(s) A: GIPCAESCVYIPCTVTALLGCSCSDKVCYN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:10)
Show buried residues

Minimal score value
-2.0563
Maximal score value
2.6861
Average score
0.6149
Total score value
18.4457

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.1385
2 I A 1.4836
3 P A 0.6210
4 C A 0.6471
5 A A 0.1867
6 E A 0.3550
7 S A 0.4002
8 C A 0.9253
9 V A 1.9118
10 Y A 2.2868
11 I A 1.6704
12 P A 0.9814
13 C A 1.3323
14 T A 1.3712
15 V A 2.4350
16 T A 0.0000
17 A A 1.5492
18 L A 2.6861
19 L A 2.2147
20 G A 0.6241
21 C A 0.0000
22 S A -0.2626
23 C A 0.0156
24 S A -1.0206
25 D A -2.0563
26 K A -1.2254
27 V A -0.2815
28 C A 0.0000
29 Y A -0.1127
30 N A -0.4312
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018