| Chain sequence(s) |
A: FFKGHGG
C: FFKGHGG B: FFKGHGG D: FFKGHGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:25)
[INFO] Main: Simulation completed successfully. (00:00:26)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 4.0962 | |
| 2 | F | A | 2.7912 | |
| 3 | K | A | 0.8776 | |
| 4 | G | A | -0.6251 | |
| 5 | H | A | -1.6738 | |
| 6 | G | A | -1.4341 | |
| 7 | G | A | -1.0164 | |
| 1 | F | B | 3.3869 | |
| 2 | F | B | 2.4076 | |
| 3 | K | B | -0.3253 | |
| 4 | G | B | -0.6242 | |
| 5 | H | B | -1.1340 | |
| 6 | G | B | -1.2718 | |
| 7 | G | B | -0.7452 | |
| 1 | F | C | 4.3807 | |
| 2 | F | C | 2.2762 | |
| 3 | K | C | -1.0610 | |
| 4 | G | C | -1.1132 | |
| 5 | H | C | -2.2828 | |
| 6 | G | C | -1.6541 | |
| 7 | G | C | -1.2511 | |
| 1 | F | D | 4.8341 | |
| 2 | F | D | 3.3735 | |
| 3 | K | D | 0.4951 | |
| 4 | G | D | -1.2017 | |
| 5 | H | D | -0.8489 | |
| 6 | G | D | -1.7839 | |
| 7 | G | D | -1.3288 |