Project name: RFC4

Status: done

Started: 2025-07-15 15:35:30
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Chain sequence(s) A: KKVKIKLTQVVSSTAENVTINATFTATGDTKVTLELTDESGNLIDKDTDEVTGNETATATASYSAATGSTVTITGTAESTDGKVPTNIELNVTVTTG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:25)
Show buried residues

Minimal score value
-3.2203
Maximal score value
1.1784
Average score
-0.9337
Total score value
-90.5668

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.0659
2 K A -3.2203
3 V A -1.9166
4 K A -2.6065
5 I A -1.0718
6 K A -1.6847
7 L A -0.5112
8 T A -0.2151
9 Q A 0.3074
10 V A 1.1784
11 V A 0.9940
12 S A 0.0581
13 S A -0.5947
14 T A -0.9784
15 A A -1.4743
16 E A -2.6889
17 N A -2.3631
18 V A 0.0000
19 T A -0.6425
20 I A 0.0000
21 N A -0.8363
22 A A 0.0000
23 T A -0.6965
24 F A 0.0000
25 T A -0.8119
26 A A 0.0000
27 T A -1.3816
28 G A 0.0000
29 D A -2.0736
30 T A 0.0000
31 K A -1.8899
32 V A 0.0000
33 T A 0.0000
34 L A 0.0000
35 E A -1.2440
36 L A 0.0000
37 T A -0.9013
38 D A -1.5114
39 E A -2.2974
40 S A -1.7386
41 G A -1.6193
42 N A -1.4879
43 L A -0.3735
44 I A -0.1810
45 D A -1.2787
46 K A -2.1938
47 D A -1.8533
48 T A -1.5850
49 D A -1.7560
50 E A -2.5995
51 V A -1.9365
52 T A -1.7149
53 G A -1.8326
54 N A -2.4755
55 E A -2.8631
56 T A -1.8091
57 A A 0.0000
58 T A -0.9761
59 A A 0.0000
60 T A -0.9899
61 A A 0.0000
62 S A -0.7287
63 Y A -0.0015
64 S A -0.3536
65 A A 0.0000
66 A A -0.7157
67 T A -1.1877
68 G A -0.8207
69 S A -0.7837
70 T A -0.5606
71 V A 0.0000
72 T A -0.1404
73 I A 0.0000
74 T A -0.5345
75 G A 0.0000
76 T A -1.0203
77 A A 0.0000
78 E A -2.1057
79 S A 0.0000
80 T A -1.8548
81 D A -1.9203
82 G A -2.4635
83 K A -1.9951
84 V A 0.3265
85 P A 0.0000
86 T A -0.8392
87 N A -1.3942
88 I A -0.6705
89 E A -1.4050
90 L A -0.8844
91 N A -0.9712
92 V A -0.1785
93 T A 0.0494
94 V A 0.7429
95 T A -0.2930
96 T A -0.9824
97 G A -1.4761
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Laboratory of Theory of Biopolymers 2018