Project name: obj1 [mutate: TY117C, WN110C] [mutate: VL5C, GM10C, VV12C]

Status: done

Started: 2025-02-10 09:57:20
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYNGQGTLVYVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VV12C,GM10C,VL5C
Energy difference between WT (input) and mutated protein (by FoldX) 2.45483 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:21)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:24)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:46)
Show buried residues

Minimal score value
-3.2302
Maximal score value
2.1068
Average score
-0.6453
Total score value
-77.4399

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0043
2 V C -1.1677
3 Q C -1.6301
4 L C 0.0000
5 L C 0.0920 mutated: VL5C
6 E C -0.1399
7 S C -0.3836
8 G C -0.6121
9 G C 0.6060
10 M C 2.1068 mutated: GM10C
11 L C 2.0853
12 V C 0.0000 mutated: VV12C
13 Q C -1.3439
14 P C -1.4670
15 G C -1.4130
16 G C -1.0024
17 S C -1.3191
18 L C 0.0000
19 R C -2.2089
20 L C 0.0000
21 S C -0.5749
22 C C 0.0000
23 A C -0.2914
24 A C 0.0000
25 S C -0.2324
26 D C 0.0000
27 F C 1.5455
28 T C 0.2523
29 F C 0.0000
30 R C -2.0325
31 S C -0.8868
32 Y C -1.2169
33 E C -1.0773
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.3679
40 A C -0.9554
41 P C -1.3080
42 G C -1.4328
43 K C -2.1273
44 G C -1.0199
45 L C 0.4984
46 E C -0.3764
47 W C 0.3453
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.5839
53 G C -1.2458
54 S C -1.2287
55 G C -1.0817
56 G C -0.7345
57 S C -0.3028
58 T C 0.1987
59 Y C 0.6076
60 Y C -0.3488
61 A C -1.1282
62 D C -2.3201
63 S C -1.6643
64 V C 0.0000
65 K C -2.3709
66 G C -1.6108
67 R C 0.0000
68 F C 0.0000
69 T C -0.6752
70 I C 0.0000
71 S C -0.5628
72 R C -1.3615
73 D C -1.9794
74 N C -2.1883
75 S C -1.7897
76 K C -2.3180
77 N C -1.6521
78 T C 0.0000
79 L C 0.0000
80 Y C -0.6786
81 L C 0.0000
82 Q C -1.2909
83 M C 0.0000
84 N C -1.3479
85 S C -1.2257
86 L C 0.0000
87 R C -2.3934
88 A C -1.7833
89 E C -2.2409
90 D C 0.0000
91 T C -0.1033
92 A C 0.0000
93 I C 1.1550
94 Y C 0.0000
95 Y C 0.1480
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -2.9587
101 D C -3.2302
102 G C -2.0111
103 F C -1.1502
104 N C -2.3471
105 K C -3.0454
106 G C -1.5928
107 F C -0.7191
108 D C -1.2074
109 Y C -0.9657
110 N C -1.3150
111 G C 0.0000
112 Q C -1.3765
113 G C -0.3240
114 T C 0.5728
115 L C 1.8678
116 V C 0.0000
117 Y C 1.2624
118 V C 0.0000
119 S C -0.7053
120 S C -1.0319
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Laboratory of Theory of Biopolymers 2018