| Chain sequence(s) |
C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYNGQGTLVYVSS
input PDB |
| Selected Chain(s) | C |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | VV12C,GM10C,VL5C |
| Energy difference between WT (input) and mutated protein (by FoldX) | 2.45483 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] FoldX: Building mutant model (00:00:21)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:24)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:45)
[INFO] Main: Simulation completed successfully. (00:00:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | C | -2.0043 | |
| 2 | V | C | -1.1677 | |
| 3 | Q | C | -1.6301 | |
| 4 | L | C | 0.0000 | |
| 5 | L | C | 0.0920 | mutated: VL5C |
| 6 | E | C | -0.1399 | |
| 7 | S | C | -0.3836 | |
| 8 | G | C | -0.6121 | |
| 9 | G | C | 0.6060 | |
| 10 | M | C | 2.1068 | mutated: GM10C |
| 11 | L | C | 2.0853 | |
| 12 | V | C | 0.0000 | mutated: VV12C |
| 13 | Q | C | -1.3439 | |
| 14 | P | C | -1.4670 | |
| 15 | G | C | -1.4130 | |
| 16 | G | C | -1.0024 | |
| 17 | S | C | -1.3191 | |
| 18 | L | C | 0.0000 | |
| 19 | R | C | -2.2089 | |
| 20 | L | C | 0.0000 | |
| 21 | S | C | -0.5749 | |
| 22 | C | C | 0.0000 | |
| 23 | A | C | -0.2914 | |
| 24 | A | C | 0.0000 | |
| 25 | S | C | -0.2324 | |
| 26 | D | C | 0.0000 | |
| 27 | F | C | 1.5455 | |
| 28 | T | C | 0.2523 | |
| 29 | F | C | 0.0000 | |
| 30 | R | C | -2.0325 | |
| 31 | S | C | -0.8868 | |
| 32 | Y | C | -1.2169 | |
| 33 | E | C | -1.0773 | |
| 34 | M | C | 0.0000 | |
| 35 | S | C | 0.0000 | |
| 36 | W | C | 0.0000 | |
| 37 | V | C | 0.0000 | |
| 38 | R | C | 0.0000 | |
| 39 | Q | C | -0.3679 | |
| 40 | A | C | -0.9554 | |
| 41 | P | C | -1.3080 | |
| 42 | G | C | -1.4328 | |
| 43 | K | C | -2.1273 | |
| 44 | G | C | -1.0199 | |
| 45 | L | C | 0.4984 | |
| 46 | E | C | -0.3764 | |
| 47 | W | C | 0.3453 | |
| 48 | V | C | 0.0000 | |
| 49 | S | C | 0.0000 | |
| 50 | A | C | 0.0000 | |
| 51 | I | C | 0.0000 | |
| 52 | S | C | -0.5839 | |
| 53 | G | C | -1.2458 | |
| 54 | S | C | -1.2287 | |
| 55 | G | C | -1.0817 | |
| 56 | G | C | -0.7345 | |
| 57 | S | C | -0.3028 | |
| 58 | T | C | 0.1987 | |
| 59 | Y | C | 0.6076 | |
| 60 | Y | C | -0.3488 | |
| 61 | A | C | -1.1282 | |
| 62 | D | C | -2.3201 | |
| 63 | S | C | -1.6643 | |
| 64 | V | C | 0.0000 | |
| 65 | K | C | -2.3709 | |
| 66 | G | C | -1.6108 | |
| 67 | R | C | 0.0000 | |
| 68 | F | C | 0.0000 | |
| 69 | T | C | -0.6752 | |
| 70 | I | C | 0.0000 | |
| 71 | S | C | -0.5628 | |
| 72 | R | C | -1.3615 | |
| 73 | D | C | -1.9794 | |
| 74 | N | C | -2.1883 | |
| 75 | S | C | -1.7897 | |
| 76 | K | C | -2.3180 | |
| 77 | N | C | -1.6521 | |
| 78 | T | C | 0.0000 | |
| 79 | L | C | 0.0000 | |
| 80 | Y | C | -0.6786 | |
| 81 | L | C | 0.0000 | |
| 82 | Q | C | -1.2909 | |
| 83 | M | C | 0.0000 | |
| 84 | N | C | -1.3479 | |
| 85 | S | C | -1.2257 | |
| 86 | L | C | 0.0000 | |
| 87 | R | C | -2.3934 | |
| 88 | A | C | -1.7833 | |
| 89 | E | C | -2.2409 | |
| 90 | D | C | 0.0000 | |
| 91 | T | C | -0.1033 | |
| 92 | A | C | 0.0000 | |
| 93 | I | C | 1.1550 | |
| 94 | Y | C | 0.0000 | |
| 95 | Y | C | 0.1480 | |
| 96 | C | C | 0.0000 | |
| 97 | A | C | 0.0000 | |
| 98 | R | C | 0.0000 | |
| 99 | L | C | 0.0000 | |
| 100 | R | C | -2.9587 | |
| 101 | D | C | -3.2302 | |
| 102 | G | C | -2.0111 | |
| 103 | F | C | -1.1502 | |
| 104 | N | C | -2.3471 | |
| 105 | K | C | -3.0454 | |
| 106 | G | C | -1.5928 | |
| 107 | F | C | -0.7191 | |
| 108 | D | C | -1.2074 | |
| 109 | Y | C | -0.9657 | |
| 110 | N | C | -1.3150 | |
| 111 | G | C | 0.0000 | |
| 112 | Q | C | -1.3765 | |
| 113 | G | C | -0.3240 | |
| 114 | T | C | 0.5728 | |
| 115 | L | C | 1.8678 | |
| 116 | V | C | 0.0000 | |
| 117 | Y | C | 1.2624 | |
| 118 | V | C | 0.0000 | |
| 119 | S | C | -0.7053 | |
| 120 | S | C | -1.0319 |