Chain sequence(s) |
C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYNGQGTLVYVSS
input PDB |
Selected Chain(s) | C |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | VV12C,GM10C,VL5C |
Energy difference between WT (input) and mutated protein (by FoldX) | 2.45483 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with C chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:21) [INFO] FoldX: Starting FoldX energy minimalization (00:00:24) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:45) [INFO] Main: Simulation completed successfully. (00:00:46) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | E | C | -2.0043 | |
2 | V | C | -1.1677 | |
3 | Q | C | -1.6301 | |
4 | L | C | 0.0000 | |
5 | L | C | 0.0920 | mutated: VL5C |
6 | E | C | -0.1399 | |
7 | S | C | -0.3836 | |
8 | G | C | -0.6121 | |
9 | G | C | 0.6060 | |
10 | M | C | 2.1068 | mutated: GM10C |
11 | L | C | 2.0853 | |
12 | V | C | 0.0000 | mutated: VV12C |
13 | Q | C | -1.3439 | |
14 | P | C | -1.4670 | |
15 | G | C | -1.4130 | |
16 | G | C | -1.0024 | |
17 | S | C | -1.3191 | |
18 | L | C | 0.0000 | |
19 | R | C | -2.2089 | |
20 | L | C | 0.0000 | |
21 | S | C | -0.5749 | |
22 | C | C | 0.0000 | |
23 | A | C | -0.2914 | |
24 | A | C | 0.0000 | |
25 | S | C | -0.2324 | |
26 | D | C | 0.0000 | |
27 | F | C | 1.5455 | |
28 | T | C | 0.2523 | |
29 | F | C | 0.0000 | |
30 | R | C | -2.0325 | |
31 | S | C | -0.8868 | |
32 | Y | C | -1.2169 | |
33 | E | C | -1.0773 | |
34 | M | C | 0.0000 | |
35 | S | C | 0.0000 | |
36 | W | C | 0.0000 | |
37 | V | C | 0.0000 | |
38 | R | C | 0.0000 | |
39 | Q | C | -0.3679 | |
40 | A | C | -0.9554 | |
41 | P | C | -1.3080 | |
42 | G | C | -1.4328 | |
43 | K | C | -2.1273 | |
44 | G | C | -1.0199 | |
45 | L | C | 0.4984 | |
46 | E | C | -0.3764 | |
47 | W | C | 0.3453 | |
48 | V | C | 0.0000 | |
49 | S | C | 0.0000 | |
50 | A | C | 0.0000 | |
51 | I | C | 0.0000 | |
52 | S | C | -0.5839 | |
53 | G | C | -1.2458 | |
54 | S | C | -1.2287 | |
55 | G | C | -1.0817 | |
56 | G | C | -0.7345 | |
57 | S | C | -0.3028 | |
58 | T | C | 0.1987 | |
59 | Y | C | 0.6076 | |
60 | Y | C | -0.3488 | |
61 | A | C | -1.1282 | |
62 | D | C | -2.3201 | |
63 | S | C | -1.6643 | |
64 | V | C | 0.0000 | |
65 | K | C | -2.3709 | |
66 | G | C | -1.6108 | |
67 | R | C | 0.0000 | |
68 | F | C | 0.0000 | |
69 | T | C | -0.6752 | |
70 | I | C | 0.0000 | |
71 | S | C | -0.5628 | |
72 | R | C | -1.3615 | |
73 | D | C | -1.9794 | |
74 | N | C | -2.1883 | |
75 | S | C | -1.7897 | |
76 | K | C | -2.3180 | |
77 | N | C | -1.6521 | |
78 | T | C | 0.0000 | |
79 | L | C | 0.0000 | |
80 | Y | C | -0.6786 | |
81 | L | C | 0.0000 | |
82 | Q | C | -1.2909 | |
83 | M | C | 0.0000 | |
84 | N | C | -1.3479 | |
85 | S | C | -1.2257 | |
86 | L | C | 0.0000 | |
87 | R | C | -2.3934 | |
88 | A | C | -1.7833 | |
89 | E | C | -2.2409 | |
90 | D | C | 0.0000 | |
91 | T | C | -0.1033 | |
92 | A | C | 0.0000 | |
93 | I | C | 1.1550 | |
94 | Y | C | 0.0000 | |
95 | Y | C | 0.1480 | |
96 | C | C | 0.0000 | |
97 | A | C | 0.0000 | |
98 | R | C | 0.0000 | |
99 | L | C | 0.0000 | |
100 | R | C | -2.9587 | |
101 | D | C | -3.2302 | |
102 | G | C | -2.0111 | |
103 | F | C | -1.1502 | |
104 | N | C | -2.3471 | |
105 | K | C | -3.0454 | |
106 | G | C | -1.5928 | |
107 | F | C | -0.7191 | |
108 | D | C | -1.2074 | |
109 | Y | C | -0.9657 | |
110 | N | C | -1.3150 | |
111 | G | C | 0.0000 | |
112 | Q | C | -1.3765 | |
113 | G | C | -0.3240 | |
114 | T | C | 0.5728 | |
115 | L | C | 1.8678 | |
116 | V | C | 0.0000 | |
117 | Y | C | 1.2624 | |
118 | V | C | 0.0000 | |
119 | S | C | -0.7053 | |
120 | S | C | -1.0319 |