Project name: P01 [mutate: WF3A] [mutate: FW3A, IQ2A, IQ4A, IQ6A, IQ8A, IQ13A] [mutate: QI2A, QI4A, QI6A, QI8A, QI13A] [mutate: WF3A, WF7A, WF14A] [mutate: FY3A, FY7A, FY14A] [mutate: YW3A, YW7A, YW14A, IN2A, IN4A, IN6A, IN8A, IN13A] [mutate: NA2A, NA4A, NA6A, NA8A, NA13A] [mutate: AS2A, AS4A, AS6A, AS8A, AS13A] [mutate: SM2A, SM4A, SM6A, SM8A, SM13A]

Status: done

Started: 2025-10-06 14:32:37
Settings
Chain sequence(s) A: KSWSKSWSKLLKSW
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues SM8A,SM2A,SM4A,SM13A,SM6A
Energy difference between WT (input) and mutated protein (by FoldX) -2.52008 kcal/mol
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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:08)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:12)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:23)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:24)
Show buried residues

Minimal score value
-1.1872
Maximal score value
1.3447
Average score
0.0906
Total score value
1.2677

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -0.9762
2 M A 0.5430 mutated: SM2A
3 W A 0.9882
4 M A 0.1986 mutated: SM4A
5 K A -0.9793
6 M A -0.0385 mutated: SM6A
7 W A 0.4619
8 M A -0.1903 mutated: SM8A
9 K A -1.1872
10 L A 0.2542
11 L A 0.6282
12 K A -0.6509
13 M A 0.8713 mutated: SM13A
14 W A 1.3447
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Laboratory of Theory of Biopolymers 2018