Project name: CM254-286 LPETIC

Status: done

Started: 2026-03-07 15:19:02
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Chain sequence(s) A: LPETIC
C: LPETIC
B: LPETIC
E: LPETIC
D: LPETIC
G: LPETIC
F: LPETIC
I: LPETIC
H: LPETIC
J: LPETIC
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,J
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:17)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-1.1811
Maximal score value
2.98
Average score
0.9077
Total score value
54.4629

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L C 2.1869
2 P C 1.1590
3 E C 0.3238
4 T C 0.1013
5 I C 0.5395
6 C C 1.5303
1 L D 2.0286
2 P D 0.0000
3 E D -0.3111
4 T D 0.0000
5 I D 1.9810
6 C D 2.4327
1 L B 2.0334
2 P B 0.6767
3 E B 0.1378
4 T B 0.3190
5 I B 0.9217
6 C B 1.5393
1 L A 1.4097
2 P A -0.1106
3 E A -1.0695
4 T A 0.5882
5 I A 2.1987
6 C A 2.1486
1 L F 2.9800
2 P F 1.2470
3 E F 0.0989
4 T F 0.3208
5 I F 0.0000
6 C F 1.8438
1 L E 1.9074
2 P E 0.0000
3 E E -0.6044
4 T E 0.7320
5 I E 2.1785
6 C E 2.1595
1 L H 2.2555
2 P H 0.0000
3 E H -0.8776
4 T H 0.0385
5 I H 1.6668
6 C H 2.1180
1 L G 2.2916
2 P G 1.2429
3 E G 0.4169
4 T G 0.0177
5 I G 0.0000
6 C G 1.4778
1 L J 1.8286
2 P J -0.0246
3 E J -1.1811
4 T J -0.1902
5 I J 1.1947
6 C J 1.6461
1 L I 1.3428
2 P I -0.1817
3 E I -1.0864
4 T I 0.5523
5 I I 2.3077
6 C I 1.9781
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Laboratory of Theory of Biopolymers 2018