| Chain sequence(s) |
A: LPETIC
C: LPETIC B: LPETIC E: LPETIC D: LPETIC G: LPETIC F: LPETIC I: LPETIC H: LPETIC J: LPETIC input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,J |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:17)
[INFO] Main: Simulation completed successfully. (00:00:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | L | C | 2.1869 | |
| 2 | P | C | 1.1590 | |
| 3 | E | C | 0.3238 | |
| 4 | T | C | 0.1013 | |
| 5 | I | C | 0.5395 | |
| 6 | C | C | 1.5303 | |
| 1 | L | D | 2.0286 | |
| 2 | P | D | 0.0000 | |
| 3 | E | D | -0.3111 | |
| 4 | T | D | 0.0000 | |
| 5 | I | D | 1.9810 | |
| 6 | C | D | 2.4327 | |
| 1 | L | B | 2.0334 | |
| 2 | P | B | 0.6767 | |
| 3 | E | B | 0.1378 | |
| 4 | T | B | 0.3190 | |
| 5 | I | B | 0.9217 | |
| 6 | C | B | 1.5393 | |
| 1 | L | A | 1.4097 | |
| 2 | P | A | -0.1106 | |
| 3 | E | A | -1.0695 | |
| 4 | T | A | 0.5882 | |
| 5 | I | A | 2.1987 | |
| 6 | C | A | 2.1486 | |
| 1 | L | F | 2.9800 | |
| 2 | P | F | 1.2470 | |
| 3 | E | F | 0.0989 | |
| 4 | T | F | 0.3208 | |
| 5 | I | F | 0.0000 | |
| 6 | C | F | 1.8438 | |
| 1 | L | E | 1.9074 | |
| 2 | P | E | 0.0000 | |
| 3 | E | E | -0.6044 | |
| 4 | T | E | 0.7320 | |
| 5 | I | E | 2.1785 | |
| 6 | C | E | 2.1595 | |
| 1 | L | H | 2.2555 | |
| 2 | P | H | 0.0000 | |
| 3 | E | H | -0.8776 | |
| 4 | T | H | 0.0385 | |
| 5 | I | H | 1.6668 | |
| 6 | C | H | 2.1180 | |
| 1 | L | G | 2.2916 | |
| 2 | P | G | 1.2429 | |
| 3 | E | G | 0.4169 | |
| 4 | T | G | 0.0177 | |
| 5 | I | G | 0.0000 | |
| 6 | C | G | 1.4778 | |
| 1 | L | J | 1.8286 | |
| 2 | P | J | -0.0246 | |
| 3 | E | J | -1.1811 | |
| 4 | T | J | -0.1902 | |
| 5 | I | J | 1.1947 | |
| 6 | C | J | 1.6461 | |
| 1 | L | I | 1.3428 | |
| 2 | P | I | -0.1817 | |
| 3 | E | I | -1.0864 | |
| 4 | T | I | 0.5523 | |
| 5 | I | I | 2.3077 | |
| 6 | C | I | 1.9781 |