Project name: RasNeu

Status: done

Started: 2026-07-15 16:05:05
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Chain sequence(s) A: ASPSKTSNTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPECCAVFRLLHEHKGKKARLDWNTDAASLIGEELQVDFLDHVPLTTHNFARKTFLKLAFCDICQKFLLNGFRCQTCGYKFHEHCSTKVPTMCVDWSNIRQLLLFPNSTIGDSGVPALPSLTMRRMRESGSAIHAVLTSINQSSIALAGSGLYCQRLPSSRTHGGTESLKGKNTENMGFYGTLKMIFYKMKRKLDHGSEVRSFSLGKKPCKVSEYTSTTGLV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:16)
Show buried residues

Minimal score value
-3.9866
Maximal score value
2.5273
Average score
-0.7054
Total score value
-186.9191

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 A A -0.1384
2 S A -0.6020
3 P A -0.9211
4 S A -1.2556
5 K A -2.0851
6 T A -1.2639
7 S A -1.2456
8 N A -1.6554
9 T A -0.9477
10 I A 0.0000
11 R A -1.0760
12 V A 0.0000
13 F A -0.9516
14 L A 0.0000
15 P A -1.5270
16 N A -2.2434
17 K A -2.5869
18 Q A -2.1171
19 R A -2.0465
20 T A -0.0185
21 V A 0.8283
22 V A -0.4034
23 N A -1.1921
24 V A 0.0000
25 R A -2.9093
26 N A -2.5944
27 G A -1.7993
28 M A -1.7400
29 S A -1.8762
30 L A 0.0000
31 H A -1.5760
32 D A -1.5634
33 C A 0.0000
34 L A 0.0000
35 M A -1.3846
36 K A -1.9929
37 A A 0.0000
38 L A 0.0000
39 K A -1.6816
40 V A 0.0500
41 R A -0.6609
42 G A -0.8991
43 L A 0.0000
44 Q A -1.2993
45 P A 0.0000
46 E A -1.9520
47 C A 0.0000
48 C A 0.0000
49 A A 0.0000
50 V A 0.0000
51 F A -1.6584
52 R A -1.8114
53 L A -2.1204
54 L A -2.4559
55 H A -3.0659
56 E A -3.3749
57 H A -3.6957
58 K A -3.5845
59 G A -2.9390
60 K A -3.7710
61 K A -2.9828
62 A A -2.0530
63 R A -2.6248
64 L A -1.9566
65 D A -2.5809
66 W A -2.0652
67 N A -2.1968
68 T A -1.6656
69 D A -2.1049
70 A A 0.0000
71 A A -1.2967
72 S A -0.6377
73 L A 0.0000
74 I A -0.8330
75 G A -1.0192
76 E A -1.5280
77 E A -1.3313
78 L A 0.0000
79 Q A -1.0495
80 V A 0.0000
81 D A -0.5954
82 F A -0.5202
83 L A -0.8979
84 D A -1.7957
85 H A -0.9694
86 V A 0.0000
87 P A -0.2262
88 L A 0.8195
89 T A 0.2484
90 T A -0.1631
91 H A -0.8175
92 N A -1.6602
93 F A -1.4681
94 A A -1.7694
95 R A -3.0059
96 K A -2.0722
97 T A -0.9605
98 F A 0.0000
99 L A 1.0225
100 K A 0.0997
101 L A 1.8361
102 A A 0.0000
103 F A 0.6289
104 C A 0.0000
105 D A -1.9721
106 I A -1.2195
107 C A -1.0051
108 Q A -1.6303
109 K A -1.1434
110 F A 1.3135
111 L A 0.0000
112 L A 1.1195
113 N A -1.3635
114 G A 0.0000
115 F A 0.0000
116 R A -2.0547
117 C A 0.0000
118 Q A -1.9409
119 T A -1.0168
120 C A -0.7536
121 G A -0.9344
122 Y A -0.8412
123 K A -1.6481
124 F A 0.0000
125 H A -1.8695
126 E A -2.9081
127 H A -2.1780
128 C A 0.0000
129 S A -1.3928
130 T A -1.2517
131 K A -1.6614
132 V A -0.7302
133 P A -0.3608
134 T A -0.4394
135 M A 0.0623
136 C A 0.0000
137 V A 0.0000
138 D A -0.7002
139 W A -0.8539
140 S A -1.3636
141 N A -1.8133
142 I A 0.0000
143 R A -1.6548
144 Q A -0.7173
145 L A 0.7034
146 L A 1.0516
147 L A 2.0709
148 F A 2.1428
149 P A 0.7579
150 N A -0.2427
151 S A -0.0276
152 T A 0.1406
153 I A 1.0650
154 G A -0.5134
155 D A -1.7290
156 S A -0.8162
157 G A -0.2032
158 V A 1.5651
159 P A 0.9806
160 A A 1.0322
161 L A 1.7703
162 P A 0.8075
163 S A 0.9722
164 L A 1.5254
165 T A 0.4055
166 M A 0.1503
167 R A -1.9433
168 R A -2.3990
169 M A -1.6334
170 R A -2.9345
171 E A -2.7355
172 S A -1.7154
173 G A -1.3206
174 S A -0.1313
175 A A 0.5665
176 I A 1.7493
177 H A 0.6697
178 A A 1.5090
179 V A 2.5273
180 L A 2.3219
181 T A 1.3820
182 S A 0.9393
183 I A 1.0798
184 N A -0.8613
185 Q A -1.1699
186 S A -0.2792
187 S A 0.3625
188 I A 2.0885
189 A A 1.7463
190 L A 1.9291
191 A A 0.5039
192 G A -0.1599
193 S A 0.0321
194 G A 0.5627
195 L A 2.0620
196 Y A 1.7021
197 C A 0.7955
198 Q A -0.7908
199 R A -1.4305
200 L A 0.2143
201 P A -0.4577
202 S A -0.6999
203 S A -1.1265
204 R A -2.3097
205 T A -1.6368
206 H A -1.8122
207 G A -1.2061
208 G A -1.3226
209 T A -1.3636
210 E A -1.9137
211 S A -0.7618
212 L A -0.0333
213 K A -1.8867
214 G A -1.9919
215 K A -2.9493
216 N A -3.2441
217 T A -2.2417
218 E A -2.9694
219 N A -2.0931
220 M A -0.2665
221 G A 0.0634
222 F A 1.0606
223 Y A 1.7716
224 G A 0.8667
225 T A 1.1346
226 L A 1.2394
227 K A 0.5035
228 M A 0.8791
229 I A 1.0545
230 F A 0.4030
231 Y A -0.5013
232 K A -1.9885
233 M A -1.7768
234 K A -2.8150
235 R A -3.9866
236 K A -3.8280
237 L A -3.0477
238 D A -3.7983
239 H A -3.4327
240 G A -2.2522
241 S A -1.5620
242 E A -2.1628
243 V A 0.0592
244 R A -1.1531
245 S A 0.1442
246 F A 1.7276
247 S A 1.1171
248 L A 1.2281
249 G A -0.7598
250 K A -2.4133
251 K A -2.5866
252 P A -1.4418
253 C A -0.3931
254 K A -0.5919
255 V A 0.5861
256 S A -0.2868
257 E A -0.8917
258 Y A 0.2930
259 T A 0.0332
260 S A -0.0411
261 T A -0.3230
262 T A -0.0321
263 G A 0.6591
264 L A 2.2092
265 V A 2.4731
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Laboratory of Theory of Biopolymers 2018