| Chain sequence(s) |
H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGRPWYSETGTSAFDIWGQGTMVTVSS
L: DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQSDHYPTFGGGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:00)
[INFO] Main: Simulation completed successfully. (00:01:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -0.9360 | |
| 2 | V | H | 0.1479 | |
| 3 | Q | H | -0.4610 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.3418 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.5008 | |
| 8 | G | H | -0.8145 | |
| 9 | G | H | -0.1614 | |
| 11 | G | H | 0.5612 | |
| 12 | V | H | 1.5078 | |
| 13 | V | H | 0.0000 | |
| 14 | Q | H | -1.2380 | |
| 15 | P | H | -1.5642 | |
| 16 | G | H | -2.0532 | |
| 17 | R | H | -2.6111 | |
| 18 | S | H | -1.7338 | |
| 19 | L | H | -1.0095 | |
| 20 | R | H | -1.5242 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.4068 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.2704 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.6024 | |
| 27 | G | H | -0.4873 | |
| 28 | F | H | -0.0956 | |
| 29 | T | H | -0.1866 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -0.9051 | |
| 36 | S | H | 0.0000 | |
| 37 | Y | H | 0.1693 | |
| 38 | G | H | -0.4782 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.7244 | |
| 45 | A | H | -1.1404 | |
| 46 | P | H | -0.9220 | |
| 47 | G | H | -1.4490 | |
| 48 | K | H | -2.2594 | |
| 49 | G | H | -1.3901 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.9265 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | V | H | 0.2973 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | 0.0000 | |
| 58 | Y | H | -0.7660 | |
| 59 | D | H | -2.0597 | |
| 62 | G | H | -1.4553 | |
| 63 | S | H | -1.2056 | |
| 64 | N | H | -1.3578 | |
| 65 | K | H | -0.5492 | |
| 66 | Y | H | 0.2192 | |
| 67 | Y | H | -0.4616 | |
| 68 | A | H | -1.2267 | |
| 69 | D | H | -2.4197 | |
| 70 | S | H | -1.8106 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.4622 | |
| 74 | G | H | -1.7304 | |
| 75 | R | H | -1.6182 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7316 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.6113 | |
| 80 | R | H | -1.0939 | |
| 81 | D | H | -1.6315 | |
| 82 | N | H | -1.8900 | |
| 83 | S | H | -1.5503 | |
| 84 | K | H | -2.3524 | |
| 85 | N | H | -1.7129 | |
| 86 | T | H | -1.0091 | |
| 87 | L | H | 0.0000 | |
| 88 | Y | H | -0.4091 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.0057 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.6657 | |
| 93 | S | H | -1.6204 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.2840 | |
| 96 | A | H | -1.5696 | |
| 97 | E | H | -2.1661 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.5310 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.3431 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.3090 | |
| 107 | G | H | 0.0000 | |
| 108 | R | H | -0.4148 | |
| 109 | P | H | -0.1962 | |
| 110 | W | H | 0.6532 | |
| 111 | Y | H | 0.9892 | |
| 111A | S | H | -0.4672 | |
| 111B | E | H | -1.8111 | |
| 112B | T | H | -1.0333 | |
| 112A | G | H | -1.2336 | |
| 112 | T | H | -0.9370 | |
| 113 | S | H | -0.3038 | |
| 114 | A | H | 0.0000 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.3701 | |
| 117 | I | H | 0.0261 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.4816 | |
| 121 | G | H | -0.5525 | |
| 122 | T | H | -0.0556 | |
| 123 | M | H | 0.6148 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.2566 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.2321 | |
| 128 | S | H | -0.3178 | |
| 1 | D | L | -2.2368 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -1.9893 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.0297 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.4991 | |
| 8 | P | L | -0.5275 | |
| 9 | S | L | -0.7027 | |
| 10 | S | L | -0.8460 | |
| 11 | L | L | -0.6535 | |
| 12 | S | L | -0.9385 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.7042 | |
| 15 | V | L | 0.2753 | |
| 16 | G | L | -0.6934 | |
| 17 | D | L | -1.6309 | |
| 18 | R | L | -2.2873 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6159 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.6701 | |
| 23 | C | L | 0.0000 | |
| 24 | Q | L | -2.0945 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.9554 | |
| 27 | Q | L | -2.5261 | |
| 28 | D | L | -2.7154 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -1.2803 | |
| 37 | N | L | -0.8424 | |
| 38 | Y | L | -0.2967 | |
| 39 | L | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | -1.0896 | |
| 45 | K | L | -1.4737 | |
| 46 | P | L | -1.0768 | |
| 47 | G | L | -1.6585 | |
| 48 | K | L | -2.5373 | |
| 49 | A | L | -1.5489 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1079 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.1352 | |
| 56 | D | L | -0.7188 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.5902 | |
| 66 | N | L | -0.5634 | |
| 67 | L | L | 0.1750 | |
| 68 | E | L | 0.0000 | |
| 69 | T | L | -0.1873 | |
| 70 | G | L | -0.3763 | |
| 71 | V | L | -0.1692 | |
| 72 | P | L | -0.2667 | |
| 74 | S | L | -0.3611 | |
| 75 | R | L | -0.7952 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.3282 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.8409 | |
| 80 | G | L | -1.0411 | |
| 83 | S | L | -1.2983 | |
| 84 | G | L | -1.6629 | |
| 85 | T | L | -2.0545 | |
| 86 | D | L | -2.2751 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.6449 | |
| 89 | F | L | 0.0000 | |
| 90 | T | L | 0.0000 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.4038 | |
| 93 | S | L | -1.1816 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.9319 | |
| 96 | P | L | -0.9859 | |
| 97 | E | L | -1.6214 | |
| 98 | D | L | 0.0000 | |
| 99 | I | L | -0.2356 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.6744 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | D | L | -1.6888 | |
| 114 | H | L | -1.0260 | |
| 115 | Y | L | 0.1861 | |
| 116 | P | L | 0.0000 | |
| 117 | T | L | -0.6992 | |
| 118 | F | L | -0.3151 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -1.1522 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.2767 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.9510 | |
| 126 | I | L | -0.6646 | |
| 127 | K | L | -1.4815 |