Project name: Cudarolimab

Status: done

Started: 2026-03-23 04:30:07
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Chain sequence(s) H: QVQLVESGGGVVQPGRSLRLSCAASGFTFSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGRPWYSETGTSAFDIWGQGTMVTVSS
L: DIQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQSDHYPTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-2.7154
Maximal score value
1.5078
Average score
-0.6156
Total score value
-141.5887

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -0.9360
2 V H 0.1479
3 Q H -0.4610
4 L H 0.0000
5 V H 0.3418
6 E H 0.0000
7 S H -0.5008
8 G H -0.8145
9 G H -0.1614
11 G H 0.5612
12 V H 1.5078
13 V H 0.0000
14 Q H -1.2380
15 P H -1.5642
16 G H -2.0532
17 R H -2.6111
18 S H -1.7338
19 L H -1.0095
20 R H -1.5242
21 L H 0.0000
22 S H -0.4068
23 C H 0.0000
24 A H -0.2704
25 A H 0.0000
26 S H -0.6024
27 G H -0.4873
28 F H -0.0956
29 T H -0.1866
30 F H 0.0000
35 S H -0.9051
36 S H 0.0000
37 Y H 0.1693
38 G H -0.4782
39 M H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.7244
45 A H -1.1404
46 P H -0.9220
47 G H -1.4490
48 K H -2.2594
49 G H -1.3901
50 L H 0.0000
51 E H -0.9265
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 V H 0.2973
56 I H 0.0000
57 S H 0.0000
58 Y H -0.7660
59 D H -2.0597
62 G H -1.4553
63 S H -1.2056
64 N H -1.3578
65 K H -0.5492
66 Y H 0.2192
67 Y H -0.4616
68 A H -1.2267
69 D H -2.4197
70 S H -1.8106
71 V H 0.0000
72 K H -2.4622
74 G H -1.7304
75 R H -1.6182
76 F H 0.0000
77 T H -0.7316
78 I H 0.0000
79 S H -0.6113
80 R H -1.0939
81 D H -1.6315
82 N H -1.8900
83 S H -1.5503
84 K H -2.3524
85 N H -1.7129
86 T H -1.0091
87 L H 0.0000
88 Y H -0.4091
89 L H 0.0000
90 Q H -1.0057
91 M H 0.0000
92 N H -1.6657
93 S H -1.6204
94 L H 0.0000
95 R H -2.2840
96 A H -1.5696
97 E H -2.1661
98 D H 0.0000
99 T H -0.5310
100 A H 0.0000
101 V H 0.3431
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.3090
107 G H 0.0000
108 R H -0.4148
109 P H -0.1962
110 W H 0.6532
111 Y H 0.9892
111A S H -0.4672
111B E H -1.8111
112B T H -1.0333
112A G H -1.2336
112 T H -0.9370
113 S H -0.3038
114 A H 0.0000
115 F H 0.0000
116 D H -0.3701
117 I H 0.0261
118 W H 0.0000
119 G H 0.0000
120 Q H -1.4816
121 G H -0.5525
122 T H -0.0556
123 M H 0.6148
124 V H 0.0000
125 T H 0.2566
126 V H 0.0000
127 S H -0.2321
128 S H -0.3178
1 D L -2.2368
2 I L 0.0000
3 Q L -1.9893
4 M L 0.0000
5 T L -1.0297
6 Q L 0.0000
7 S L -0.4991
8 P L -0.5275
9 S L -0.7027
10 S L -0.8460
11 L L -0.6535
12 S L -0.9385
13 A L 0.0000
14 S L -0.7042
15 V L 0.2753
16 G L -0.6934
17 D L -1.6309
18 R L -2.2873
19 V L 0.0000
20 T L -0.6159
21 I L 0.0000
22 T L -0.6701
23 C L 0.0000
24 Q L -2.0945
25 A L 0.0000
26 S L -1.9554
27 Q L -2.5261
28 D L -2.7154
29 I L 0.0000
36 S L -1.2803
37 N L -0.8424
38 Y L -0.2967
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.0896
45 K L -1.4737
46 P L -1.0768
47 G L -1.6585
48 K L -2.5373
49 A L -1.5489
50 P L 0.0000
51 K L -1.1079
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.1352
56 D L -0.7188
57 A L 0.0000
65 S L -0.5902
66 N L -0.5634
67 L L 0.1750
68 E L 0.0000
69 T L -0.1873
70 G L -0.3763
71 V L -0.1692
72 P L -0.2667
74 S L -0.3611
75 R L -0.7952
76 F L 0.0000
77 S L -0.3282
78 G L 0.0000
79 S L -0.8409
80 G L -1.0411
83 S L -1.2983
84 G L -1.6629
85 T L -2.0545
86 D L -2.2751
87 F L 0.0000
88 T L -0.6449
89 F L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.4038
93 S L -1.1816
94 L L 0.0000
95 Q L -0.9319
96 P L -0.9859
97 E L -1.6214
98 D L 0.0000
99 I L -0.2356
100 A L 0.0000
101 T L -0.6744
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L 0.0000
108 D L -1.6888
114 H L -1.0260
115 Y L 0.1861
116 P L 0.0000
117 T L -0.6992
118 F L -0.3151
119 G L 0.0000
120 G L -1.1522
121 G L 0.0000
122 T L 0.0000
123 K L -1.2767
124 V L 0.0000
125 E L -0.9510
126 I L -0.6646
127 K L -1.4815
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Laboratory of Theory of Biopolymers 2018