Project name: gene2 [mutate: AT80A, GR58A]

Status: done

Started: 2026-04-27 07:54:35
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Chain sequence(s) A: MRNSQERNNRLENLCWRIWNVARRKKQKIERMLTIEHTKFPTAKEFLEYATQFAPPSGFTIQFVTLMSPNTRIVLFSATASLRSYAPSLVRIASSVVSSCRRALGRKSSPFQCGEEELTSVRRRSRRCWGGRAHMRRSSTGAGSKSSPACAGRLASVGRKKSSPGVGRKKLADIGEEDPLARGERRTHRRRGGARRWCPDDSDGHRATGGQRRSASEGWSGTE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues GR58A,AT80A
Energy difference between WT (input) and mutated protein (by FoldX) 3.10845 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:02:19)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:02:29)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:09)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:11)
Show buried residues

Minimal score value
-4.9971
Maximal score value
2.7984
Average score
-1.1447
Total score value
-255.2759

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A -0.1181
2 R A -2.2478
3 N A -2.9841
4 S A -2.8243
5 Q A -3.6748
6 E A -4.0741
7 R A -4.3188
8 N A -3.7823
9 N A -3.5458
10 R A -3.4793
11 L A -1.8664
12 E A -1.6414
13 N A -0.7969
14 L A 0.3498
15 C A 0.9751
16 W A 1.3742
17 R A 0.0568
18 I A 1.8036
19 W A 1.1379
20 N A -0.6544
21 V A -0.0312
22 A A -1.5122
23 R A -3.7256
24 R A -4.3989
25 K A -4.6362
26 K A -4.9971
27 Q A -4.8384
28 K A -4.5935
29 I A -2.6055
30 E A -2.7203
31 R A -2.7092
32 M A -0.8327
33 L A -0.1107
34 T A -0.2957
35 I A 0.7131
36 E A -1.4325
37 H A -1.5059
38 T A -1.3812
39 K A -1.9192
40 F A -0.5574
41 P A -0.8113
42 T A -0.7579
43 A A -0.7649
44 K A -2.0794
45 E A -1.8162
46 F A -0.7231
47 L A -0.5912
48 E A -1.9188
49 Y A -0.3554
50 A A 0.0796
51 T A -0.2865
52 Q A -0.4638
53 F A 1.2618
54 A A 0.6554
55 P A 0.1936
56 P A -0.3438
57 S A -0.9100
58 R A -1.5201 mutated: GR58A
59 F A 0.3834
60 T A 0.2943
61 I A 0.8284
62 Q A 0.2880
63 F A 1.8072
64 V A 2.7984
65 T A 2.3563
66 L A 2.7435
67 M A 1.6424
68 S A 0.2089
69 P A -0.7216
70 N A -1.5437
71 T A -0.9910
72 R A -1.2246
73 I A 0.9126
74 V A 1.9755
75 L A 2.4539
76 F A 2.2627
77 S A 1.2661
78 A A 0.7574
79 T A 0.4123
80 T A 0.0020 mutated: AT80A
81 S A -0.2240
82 L A 0.1144
83 R A -1.4918
84 S A -0.5949
85 Y A 1.0411
86 A A 0.4398
87 P A 0.2117
88 S A 0.4423
89 L A 1.4429
90 V A 1.2190
91 R A -0.0214
92 I A 2.1675
93 A A 1.7344
94 S A 1.0498
95 S A 1.2316
96 V A 2.0188
97 V A 1.4088
98 S A 0.0871
99 S A -0.1439
100 C A 0.0722
101 R A -1.8876
102 R A -2.3496
103 A A -1.1529
104 L A -0.5976
105 G A -2.2966
106 R A -3.1242
107 K A -2.5864
108 S A -1.2719
109 S A -0.8026
110 P A 0.1466
111 F A 1.2899
112 Q A -0.3247
113 C A -0.2874
114 G A -1.8386
115 E A -3.1699
116 E A -3.4061
117 E A -2.7663
118 L A -1.1811
119 T A -1.8989
120 S A -1.6812
121 V A -0.5899
122 R A -2.9386
123 R A -3.6047
124 R A -3.6383
125 S A -2.8367
126 R A -3.6239
127 R A -3.2245
128 C A -0.6192
129 W A 0.1448
130 G A -0.8624
131 G A -1.2817
132 R A -2.1490
133 A A -1.4028
134 H A -1.6512
135 M A -0.9629
136 R A -2.5510
137 R A -2.7878
138 S A -1.5347
139 S A -1.1682
140 T A -0.6339
141 G A -0.6266
142 A A -0.4519
143 G A -1.0233
144 S A -1.2804
145 K A -2.0658
146 S A -1.4136
147 S A -0.7980
148 P A -0.2048
149 A A 0.3033
150 C A 0.6335
151 A A -0.2397
152 G A -0.8500
153 R A -1.3023
154 L A 0.5552
155 A A 0.7053
156 S A 0.9155
157 V A 1.0100
158 G A -0.7471
159 R A -2.8996
160 K A -3.5694
161 K A -3.1027
162 S A -1.6580
163 S A -0.7373
164 P A -0.3416
165 G A 0.0484
166 V A 0.6923
167 G A -1.2373
168 R A -2.7851
169 K A -2.9748
170 K A -2.4304
171 L A -0.0220
172 A A -0.2917
173 D A -0.9255
174 I A 0.6976
175 G A -1.2554
176 E A -3.1219
177 E A -3.5675
178 D A -2.8142
179 P A -1.1988
180 L A 0.3639
181 A A -0.3574
182 R A -2.3624
183 G A -2.8273
184 E A -3.8924
185 R A -4.0427
186 R A -3.8627
187 T A -2.9458
188 H A -3.3557
189 R A -4.0056
190 R A -4.0829
191 R A -3.6826
192 G A -2.4998
193 G A -2.0833
194 A A -1.7550
195 R A -2.5158
196 R A -2.0151
197 W A -0.0253
198 C A -0.0519
199 P A -0.9303
200 D A -2.6925
201 D A -3.1566
202 S A -2.6473
203 D A -3.1277
204 G A -2.5138
205 H A -2.5352
206 R A -2.6239
207 A A -1.2312
208 T A -0.8760
209 G A -1.0082
210 G A -1.9511
211 Q A -2.8599
212 R A -3.5868
213 R A -3.2654
214 S A -1.5894
215 A A -0.9258
216 S A -1.3727
217 E A -1.9145
218 G A -1.0384
219 W A 0.3509
220 S A 0.0853
221 G A -0.7467
222 T A -1.2479
223 E A -1.9561
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Laboratory of Theory of Biopolymers 2018