| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVNAVTMWWYRQAPGKEREWVAAIKSQGAGTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCHVYVGAYRYEGRGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:02)
[INFO] Main: Simulation completed successfully. (00:03:03)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.5031 | |
| 2 | V | A | -1.2053 | |
| 3 | Q | A | -1.3999 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.1467 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7750 | |
| 8 | G | A | -1.2031 | |
| 9 | G | A | -0.8416 | |
| 10 | G | A | -0.0707 | |
| 11 | L | A | 1.0540 | |
| 12 | V | A | 0.0231 | |
| 13 | Q | A | -1.2081 | |
| 14 | A | A | -1.3752 | |
| 15 | G | A | -1.3051 | |
| 16 | G | A | -0.8685 | |
| 17 | S | A | -1.2002 | |
| 18 | L | A | -0.9220 | |
| 19 | R | A | -2.1390 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5856 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.4138 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8157 | |
| 26 | G | A | -1.0083 | |
| 27 | F | A | -0.3949 | |
| 28 | P | A | -0.8020 | |
| 29 | V | A | 0.0000 | |
| 30 | N | A | -1.6248 | |
| 31 | A | A | -0.6206 | |
| 32 | V | A | -0.1353 | |
| 33 | T | A | -0.3535 | |
| 34 | M | A | 0.0000 | |
| 35 | W | A | 0.4851 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.0243 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.0299 | |
| 40 | A | A | -2.0738 | |
| 41 | P | A | -1.4671 | |
| 42 | G | A | -1.9907 | |
| 43 | K | A | -3.3722 | |
| 44 | E | A | -3.5930 | |
| 45 | R | A | -2.7721 | |
| 46 | E | A | -1.6568 | |
| 47 | W | A | -0.4114 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | K | A | -1.5571 | |
| 53 | S | A | -1.4781 | |
| 54 | Q | A | -2.0190 | |
| 55 | G | A | -1.5516 | |
| 56 | A | A | -0.9429 | |
| 57 | G | A | -0.6093 | |
| 58 | T | A | -0.0322 | |
| 59 | W | A | 0.2139 | |
| 60 | Y | A | -0.4691 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3402 | |
| 63 | S | A | -1.7902 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5331 | |
| 66 | G | A | -1.8073 | |
| 67 | R | A | -1.5253 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7844 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -1.0504 | |
| 72 | R | A | -2.5107 | |
| 73 | D | A | -2.4421 | |
| 74 | N | A | -2.7789 | |
| 75 | A | A | -1.8956 | |
| 76 | K | A | -2.6060 | |
| 77 | N | A | -2.1179 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.9575 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2421 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4579 | |
| 85 | S | A | -1.2117 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.1951 | |
| 88 | P | A | -1.8538 | |
| 89 | E | A | -2.3025 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9538 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7300 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.5508 | |
| 96 | C | A | 0.0000 | |
| 97 | H | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | Y | A | 0.8147 | |
| 100 | V | A | 0.8187 | |
| 101 | G | A | 0.1904 | |
| 102 | A | A | 0.4495 | |
| 103 | Y | A | 0.8160 | |
| 104 | R | A | -0.8133 | |
| 105 | Y | A | -0.5556 | |
| 106 | E | A | -1.4766 | |
| 107 | G | A | -1.2165 | |
| 108 | R | A | -2.0494 | |
| 109 | G | A | 0.0000 | |
| 110 | T | A | 0.0000 | |
| 111 | Q | A | -1.2701 | |
| 112 | V | A | 0.0000 | |
| 113 | T | A | -0.3087 | |
| 114 | V | A | 0.0000 | |
| 115 | S | A | -0.7178 |