Project name: seed5

Status: done

Started: 2026-03-03 09:06:17
Settings
Chain sequence(s) A: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
B: NASCEYSASHKQDLLLGSTGSISCPSLSCQSDAQSPAVTWYKNGKLLSVERSNRIVVDEVYDYHQGTYVCDYTQSDTVSSWTVRAVVQVRTIVGDTKDKTHTCPPCPAPEAAGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALGAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLSPGK
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:41)
Show buried residues

Minimal score value
-3.969
Maximal score value
1.8216
Average score
-0.7188
Total score value
-465.7544

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -1.2091
2 A A -0.7457
3 S A -0.6049
4 C A -0.1287
5 E A -0.8937
6 Y A 0.4775
7 S A -0.0247
8 A A -0.1744
9 S A -0.4360
10 H A -0.8901
11 K A -1.2894
12 Q A -1.1494
13 D A -0.7649
14 L A 0.0000
15 L A 1.0750
16 L A 1.1251
17 G A -0.1092
18 S A -0.1797
19 T A -0.8158
20 G A -0.2685
21 S A -0.0657
22 I A 0.0000
23 S A -0.3577
24 C A 0.0000
25 P A 0.0000
26 S A 0.1129
27 L A 0.0000
28 S A -0.2274
29 C A 0.1062
30 Q A -1.0159
31 S A -1.3462
32 D A -2.2251
33 A A -1.9179
34 Q A -2.1365
35 S A 0.0000
36 P A -1.1644
37 A A -0.6102
38 V A 0.0000
39 T A 0.0000
40 W A 0.0000
41 Y A 0.0000
42 K A -0.4031
43 N A -0.5086
44 G A -0.2673
45 K A -0.1966
46 L A 0.6333
47 L A 0.7498
48 S A 0.5197
49 V A 0.6006
50 E A -0.1018
51 R A -1.0656
52 S A -0.9240
53 N A 0.0000
54 R A -0.6852
55 I A 0.2669
56 V A 0.6391
57 V A 0.0000
58 D A -2.1450
59 E A -1.2458
60 V A 0.0000
61 Y A -0.4052
62 D A -0.5121
63 Y A -0.6318
64 H A 0.0000
65 Q A -1.5288
66 G A -0.9170
67 T A 0.0000
68 Y A 0.0000
69 V A 0.0000
70 C A 0.0000
71 D A 0.0000
72 Y A 0.0000
73 T A -0.3090
74 Q A -1.0159
75 S A -0.9616
76 D A -1.2069
77 T A -0.0114
78 V A 1.1710
79 S A 0.1148
80 S A -0.2674
81 W A -0.0973
82 T A -0.0505
83 V A 0.0720
84 R A -0.1737
85 A A 0.0000
86 V A 0.0000
87 V A 0.0000
88 Q A -1.0857
89 V A 0.0000
90 R A -1.3477
91 T A -0.0224
92 I A 1.0721
93 V A 1.7129
94 G A -0.0156
95 D A -2.3055
96 T A -2.4375
97 K A -3.6879
98 D A -3.9509
99 K A -3.5293
100 T A -2.0409
101 H A -1.6361
102 T A -1.0153
103 C A 0.1246
104 P A -0.0285
105 P A 0.2836
106 C A 0.4706
107 P A -0.4717
108 A A -0.7166
109 P A -1.1338
110 E A -2.1176
111 A A -1.3636
112 A A -0.9375
113 G A -0.9944
114 G A -0.8645
115 P A 0.0000
116 S A -0.2447
117 V A 0.0000
118 F A -0.2259
119 L A 0.0000
120 F A 0.0000
121 P A -0.1359
122 P A 0.0000
123 K A 0.0000
124 P A -0.3690
125 K A -0.0203
126 D A 0.0000
127 T A 0.0000
128 L A 0.0000
129 M A 0.8517
130 I A 1.8015
131 S A 0.8256
132 R A 0.0000
133 T A 0.4242
134 P A 0.0000
135 E A -0.3337
136 V A 0.0000
137 T A 0.0000
138 C A 0.0000
139 V A 0.0000
140 V A 0.0000
141 V A 0.0000
142 D A -1.1786
143 V A 0.0000
144 S A -2.0429
145 H A -2.6059
146 E A -2.9796
147 D A -2.6064
148 P A -2.6165
149 E A -3.0822
150 V A -1.9431
151 K A -2.2326
152 F A -1.4188
153 N A -1.1512
154 W A 0.0000
155 Y A -0.7123
156 V A -0.9875
157 D A -2.2181
158 G A -0.9548
159 V A 0.5166
160 E A -0.7334
161 V A -0.5728
162 H A -1.8898
163 N A -2.1856
164 A A -1.8254
165 K A -2.4282
166 T A -1.9159
167 K A -2.0162
168 P A -1.9258
169 R A -2.6186
170 E A -2.3481
171 E A -2.8030
172 Q A 0.0000
173 Y A -1.0141
174 N A -1.4897
175 S A -1.2455
176 T A 0.0000
177 Y A 0.0000
178 R A 0.0000
179 V A 0.0000
180 V A 0.0000
181 S A 0.0000
182 V A 0.0000
183 L A 0.0000
184 T A -0.4662
185 V A 0.0000
186 L A 0.6765
187 H A 0.0636
188 Q A -1.1471
189 D A -1.3848
190 W A 0.0000
191 L A -0.9422
192 N A -1.9977
193 G A -1.9865
194 K A -2.2193
195 E A -2.3201
196 Y A 0.0000
197 K A -1.6715
198 C A 0.0000
199 K A -1.4701
200 V A 0.0000
201 S A -1.4867
202 N A 0.0000
203 K A -2.6071
204 A A -1.5208
205 L A -0.7433
206 G A -0.7167
207 A A -0.5184
208 P A -0.9281
209 I A -0.6774
210 E A -1.9221
211 K A -1.2454
212 T A -1.2582
213 I A 0.0000
214 S A -1.4688
215 K A 0.0000
216 A A -1.3450
217 K A -2.2774
218 G A -1.9810
219 Q A -2.1928
220 P A -1.9150
221 R A -2.4626
222 E A -2.7773
223 P A 0.0000
224 Q A -1.2498
225 V A 0.0000
226 Y A 0.0000
227 T A -0.8317
228 L A 0.0000
229 P A -0.3543
230 P A 0.0000
231 S A 0.0000
232 R A -2.3543
233 D A -2.2185
234 E A 0.0000
235 L A -1.5524
236 T A -1.3930
237 K A -2.0351
238 N A -2.3899
239 Q A -2.1548
240 V A 0.0000
241 S A 0.0000
242 L A 0.0000
243 T A 0.0000
244 C A 0.0000
245 L A 0.0000
246 V A 0.0000
247 K A -0.6843
248 G A -1.2508
249 F A 0.0000
250 Y A -1.3912
251 P A 0.0000
252 S A -0.5247
253 D A -0.8413
254 I A -0.3243
255 A A -0.1537
256 V A 0.0000
257 E A -1.0838
258 W A 0.0000
259 E A -1.9407
260 S A 0.0000
261 N A -1.9322
262 G A -1.8151
263 Q A -2.3328
264 P A -1.9994
265 E A -1.9663
266 N A -2.3416
267 N A -1.7071
268 Y A 0.0000
269 K A 0.0000
270 T A -0.0717
271 T A 0.0000
272 P A 0.0962
273 P A -0.0835
274 V A 0.0000
275 L A -0.1045
276 D A -0.9857
277 S A -1.5419
278 D A -2.1039
279 G A -1.1381
280 S A 0.0000
281 F A -0.4159
282 F A 0.0000
283 L A 0.0000
284 Y A 0.0000
285 S A 0.0000
286 K A 0.0000
287 L A 0.0000
288 T A -0.8561
289 V A 0.0000
290 D A -2.2609
291 K A -2.4059
292 S A -2.1575
293 R A -1.9993
294 W A 0.0000
295 Q A -2.3493
296 Q A -2.1949
297 G A -1.3631
298 N A -0.9904
299 V A -0.0262
300 F A 0.0000
301 S A -1.1296
302 C A 0.0000
303 S A 0.0000
304 V A 0.0000
305 M A 0.0000
306 H A 0.0000
307 E A -1.0812
308 A A -1.6046
309 L A -1.4342
310 H A -1.7344
311 N A -1.4374
312 H A -0.8691
313 Y A -0.4970
314 T A -0.9209
315 Q A -1.5707
316 K A -1.2996
317 S A -0.6813
318 L A 0.0000
319 S A -0.3033
320 L A -0.5265
321 S A -0.7724
322 P A -1.0250
323 G A -1.4350
324 K A -2.0293
1 N B -1.2053
2 A B -0.7434
3 S B -0.6201
4 C B -0.1756
5 E B -0.9203
6 Y B 0.4425
7 S B -0.0593
8 A B -0.1955
9 S B -0.4078
10 H B -0.8912
11 K B -1.2675
12 Q B -1.0775
13 D B -0.6921
14 L B 0.0000
15 L B 0.7611
16 L B 0.9380
17 G B -0.0692
18 S B -0.2480
19 T B -0.4936
20 G B -0.0921
21 S B 0.0482
22 I B 0.0000
23 S B -0.2571
24 C B 0.0000
25 P B 0.0000
26 S B -0.1011
27 L B 0.0000
28 S B -0.2199
29 C B -0.0476
30 Q B -1.0509
31 S B -1.1762
32 D B -1.6525
33 A B -1.6335
34 Q B -1.9484
35 S B 0.0000
36 P B -0.9810
37 A B -0.4513
38 V B 0.0000
39 T B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 K B -0.4448
43 N B -0.5459
44 G B -0.3508
45 K B -0.4250
46 L B 0.6254
47 L B 0.7014
48 S B 0.4653
49 V B 0.5124
50 E B -0.0050
51 R B 0.0000
52 S B 0.0000
53 N B 0.0000
54 R B -0.2856
55 I B 0.4177
56 V B 0.6974
57 V B 0.0000
58 D B -1.0994
59 E B -0.7600
60 V B 0.0000
61 Y B -0.3510
62 D B -0.6037
63 Y B -0.6637
64 H B 0.0000
65 Q B -1.5189
66 G B -0.9081
67 T B 0.0000
68 Y B 0.0000
69 V B 0.0000
70 C B 0.0000
71 D B 0.0000
72 Y B 0.0000
73 T B -0.3027
74 Q B -1.0143
75 S B -0.9679
76 D B -1.2281
77 T B -0.0205
78 V B 1.1648
79 S B 0.1096
80 S B -0.2681
81 W B -0.0790
82 T B -0.0372
83 V B 0.0792
84 R B -0.1738
85 A B 0.0000
86 V B 0.0000
87 V B 0.0000
88 Q B -1.0677
89 V B 0.0000
90 R B -1.3549
91 T B -0.1284
92 I B 0.8722
93 V B 1.5121
94 G B -0.3114
95 D B -2.4665
96 T B -2.6111
97 K B -3.7293
98 D B -3.9690
99 K B -3.5530
100 T B -2.0479
101 H B -1.6650
102 T B -1.3992
103 C B 0.1249
104 P B -0.0295
105 P B 0.2650
106 C B 0.3253
107 P B -0.4839
108 A B -0.7196
109 P B -1.2389
110 E B -2.0286
111 A B -1.3428
112 A B -0.9189
113 G B -0.9811
114 G B -0.8381
115 P B 0.0000
116 S B -0.2320
117 V B 0.0000
118 F B -0.2476
119 L B 0.0000
120 F B 0.0000
121 P B -0.1497
122 P B 0.0000
123 K B 0.0000
124 P B -0.3664
125 K B -0.0186
126 D B 0.0000
127 T B 0.0000
128 L B 0.0000
129 M B 0.8730
130 I B 1.8216
131 S B 0.8380
132 R B 0.0000
133 T B 0.4490
134 P B 0.0000
135 E B -0.2905
136 V B 0.0000
137 T B 0.0000
138 C B 0.0000
139 V B 0.0000
140 V B 0.0000
141 V B 0.0000
142 D B -1.1549
143 V B 0.0000
144 S B -2.0193
145 H B -2.5943
146 E B -2.9613
147 D B -2.5701
148 P B -2.5911
149 E B -3.0697
150 V B -1.9411
151 K B -2.2411
152 F B -1.3739
153 N B -1.1566
154 W B 0.0000
155 Y B -0.5603
156 V B -0.8249
157 D B -2.0667
158 G B -0.8475
159 V B 0.6072
160 E B -0.6471
161 V B -0.5306
162 H B -1.8443
163 N B -2.1280
164 A B -1.7315
165 K B -2.2353
166 T B -1.8439
167 K B -2.0254
168 P B -1.9335
169 R B -2.6329
170 E B -2.3599
171 E B -2.7890
172 Q B 0.0000
173 Y B -0.9349
174 N B -1.4027
175 S B -1.1911
176 T B 0.0000
177 Y B 0.0000
178 R B 0.0000
179 V B 0.0000
180 V B 0.0000
181 S B 0.0000
182 V B 0.0000
183 L B 0.0000
184 T B -0.4109
185 V B 0.0000
186 L B 0.7724
187 H B 0.0000
188 Q B -1.0861
189 D B -1.2881
190 W B 0.0000
191 L B -0.9279
192 N B -1.9907
193 G B -2.0099
194 K B -2.0607
195 E B -1.9634
196 Y B 0.0000
197 K B -1.5208
198 C B 0.0000
199 K B -1.4782
200 V B 0.0000
201 S B -1.5080
202 N B 0.0000
203 K B -2.5961
204 A B -1.5063
205 L B -0.7372
206 G B -0.6378
207 A B -0.4542
208 P B -0.9478
209 I B -0.6917
210 E B -2.0043
211 K B -1.3332
212 T B -1.2250
213 I B 0.0000
214 S B -1.4561
215 K B 0.0000
216 A B -1.7355
217 K B -2.7446
218 G B -2.3008
219 Q B -2.3905
220 P B -2.2669
221 R B -3.0949
222 E B -3.0879
223 P B 0.0000
224 Q B -1.2585
225 V B 0.0000
226 Y B 0.0000
227 T B 0.0000
228 L B 0.0000
229 P B -0.3944
230 P B -0.8509
231 S B 0.0000
232 R B -2.6641
233 D B -2.7747
234 E B 0.0000
235 L B -1.7364
236 T B -1.4728
237 K B -1.9485
238 N B -2.3266
239 Q B -2.1101
240 V B 0.0000
241 S B 0.0000
242 L B 0.0000
243 T B 0.0000
244 C B 0.0000
245 L B 0.0000
246 V B 0.0000
247 K B -0.7200
248 G B -1.3543
249 F B 0.0000
250 Y B -1.5893
251 P B 0.0000
252 S B -0.4678
253 D B -0.8023
254 I B -0.3044
255 A B -0.1469
256 V B 0.0000
257 E B -0.9323
258 W B 0.0000
259 E B -1.6472
260 S B 0.0000
261 N B -1.8837
262 G B -1.7565
263 Q B -2.2066
264 P B -1.7606
265 E B 0.0000
266 N B -1.8884
267 N B -1.4500
268 Y B 0.0000
269 K B 0.0000
270 T B -0.0699
271 T B 0.0000
272 P B 0.1067
273 P B -0.0531
274 V B 0.0000
275 L B -0.1103
276 D B -0.9861
277 S B -1.6261
278 D B -2.2044
279 G B -1.2207
280 S B 0.0000
281 F B -0.4252
282 F B 0.0000
283 L B 0.0000
284 Y B 0.0000
285 S B 0.0000
286 K B 0.0000
287 L B 0.0000
288 T B -0.7987
289 V B 0.0000
290 D B -2.3931
291 K B -2.4480
292 S B -2.1954
293 R B -2.0074
294 W B 0.0000
295 Q B -2.3533
296 Q B -2.1694
297 G B -1.3259
298 N B -0.9704
299 V B 0.0108
300 F B 0.0000
301 S B -0.8944
302 C B 0.0000
303 S B 0.0000
304 V B 0.0000
305 M B 0.0000
306 H B 0.0000
307 E B -1.1755
308 A B -1.7801
309 L B -1.4955
310 H B -1.7009
311 N B -1.3940
312 H B -0.8145
313 Y B -0.2689
314 T B -0.6217
315 Q B -1.0466
316 K B -0.9261
317 S B -0.4818
318 L B 0.0000
319 S B -0.2566
320 L B -0.4282
321 S B -0.7287
322 P B -0.9983
323 G B -1.4215
324 K B -2.0308
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Laboratory of Theory of Biopolymers 2018