Project name: Pep5-Mut4-KLVFF

Status: done

Started: 2026-02-11 05:29:31
Settings
Chain sequence(s) A: RGDGWKPFVIDADVLHALHTVIGGIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:01)
Show buried residues

Minimal score value
-1.9654
Maximal score value
2.6319
Average score
0.488
Total score value
14.6389

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9331
2 G A -1.1598
3 D A -1.9654
4 G A -0.5856
5 W A 0.7945
6 K A -1.5291
7 P A -0.1858
8 F A 2.2270
9 V A 2.5211
10 I A 2.0216
11 D A -1.4097
12 A A -0.5985
13 D A -1.4367
14 V A 1.7207
15 L A 1.6928
16 H A -0.6837
17 A A 0.1480
18 L A 1.3633
19 H A -0.5055
20 T A 0.0699
21 V A 2.1300
22 I A 2.1070
23 G A 0.1428
24 G A 0.1495
25 I A 1.6527
26 K A -1.0362
27 L A 1.5667
28 V A 2.4428
29 F A 2.6319
30 F A 2.2857
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Laboratory of Theory of Biopolymers 2018