| Chain sequence(s) |
A: FEFEFEGKGH
C: FEFEFEGKGH B: FEFEFEGKGH E: FEFEFEGKGH D: FEFEFEGKGH G: FEFEFEGKGH F: FEFEFEGKGH I: FEFEFEGKGH H: FEFEFEGKGH K: FEFEFEGKGH J: FEFEFEGKGH L: FEFEFEGKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:08:13)
[INFO] Main: Simulation completed successfully. (00:08:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | -0.2044 | |
| 2 | E | A | -2.8019 | |
| 3 | F | A | 0.0000 | |
| 4 | E | A | -4.3178 | |
| 5 | F | A | -3.3198 | |
| 6 | E | A | -4.4890 | |
| 7 | G | A | 0.0000 | |
| 8 | K | A | -4.5107 | |
| 9 | G | A | 0.0000 | |
| 10 | H | A | -2.7507 | |
| 1 | F | B | -0.8852 | |
| 2 | E | B | -2.9689 | |
| 3 | F | B | 0.0000 | |
| 4 | E | B | -4.5100 | |
| 5 | F | B | -3.4375 | |
| 6 | E | B | -4.4655 | |
| 7 | G | B | 0.0000 | |
| 8 | K | B | -4.1889 | |
| 9 | G | B | 0.0000 | |
| 10 | H | B | -2.4859 | |
| 1 | F | C | -0.5287 | |
| 2 | E | C | -2.6530 | |
| 3 | F | C | -3.0497 | |
| 4 | E | C | -4.2984 | |
| 5 | F | C | -3.3297 | |
| 6 | E | C | -4.4892 | |
| 7 | G | C | 0.0000 | |
| 8 | K | C | -4.2222 | |
| 9 | G | C | 0.0000 | |
| 10 | H | C | -2.7556 | |
| 1 | F | D | -0.6663 | |
| 2 | E | D | -3.0503 | |
| 3 | F | D | -3.0290 | |
| 4 | E | D | -4.4034 | |
| 5 | F | D | -3.2301 | |
| 6 | E | D | -4.5046 | |
| 7 | G | D | 0.0000 | |
| 8 | K | D | -3.9854 | |
| 9 | G | D | 0.0000 | |
| 10 | H | D | -2.5778 | |
| 1 | F | E | -0.6792 | |
| 2 | E | E | -2.9826 | |
| 3 | F | E | 0.0000 | |
| 4 | E | E | -4.2074 | |
| 5 | F | E | -3.0124 | |
| 6 | E | E | -4.3896 | |
| 7 | G | E | -3.2517 | |
| 8 | K | E | -4.0778 | |
| 9 | G | E | 0.0000 | |
| 10 | H | E | -2.2417 | |
| 1 | F | F | 0.9536 | |
| 2 | E | F | -1.7403 | |
| 3 | F | F | 0.0000 | |
| 4 | E | F | -3.5243 | |
| 5 | F | F | -2.7452 | |
| 6 | E | F | -4.0901 | |
| 7 | G | F | 0.0000 | |
| 8 | K | F | -3.5235 | |
| 9 | G | F | 0.0000 | |
| 10 | H | F | -2.6374 | |
| 1 | F | G | -1.6304 | |
| 2 | E | G | -3.1737 | |
| 3 | F | G | -2.9026 | |
| 4 | E | G | -3.5107 | |
| 5 | F | G | -2.3099 | |
| 6 | E | G | -3.5489 | |
| 7 | G | G | -3.0250 | |
| 8 | K | G | -3.1669 | |
| 9 | G | G | -1.5971 | |
| 10 | H | G | -1.3829 | |
| 1 | F | H | 0.5120 | |
| 2 | E | H | -2.2163 | |
| 3 | F | H | -2.1350 | |
| 4 | E | H | -3.4417 | |
| 5 | F | H | -2.5671 | |
| 6 | E | H | -3.6049 | |
| 7 | G | H | 0.0000 | |
| 8 | K | H | -3.8251 | |
| 9 | G | H | 0.0000 | |
| 10 | H | H | -1.9858 | |
| 1 | F | I | 0.2450 | |
| 2 | E | I | -2.3526 | |
| 3 | F | I | 0.0000 | |
| 4 | E | I | -4.1671 | |
| 5 | F | I | -2.9666 | |
| 6 | E | I | -4.1748 | |
| 7 | G | I | 0.0000 | |
| 8 | K | I | -3.9613 | |
| 9 | G | I | 0.0000 | |
| 10 | H | I | -2.3366 | |
| 1 | F | J | -0.9078 | |
| 2 | E | J | -2.9939 | |
| 3 | F | J | -2.9859 | |
| 4 | E | J | -4.1852 | |
| 5 | F | J | -3.1048 | |
| 6 | E | J | -4.0064 | |
| 7 | G | J | 0.0000 | |
| 8 | K | J | -3.9123 | |
| 9 | G | J | 0.0000 | |
| 10 | H | J | -2.1774 | |
| 1 | F | K | -0.3860 | |
| 2 | E | K | -2.9309 | |
| 3 | F | K | -2.6886 | |
| 4 | E | K | -4.0303 | |
| 5 | F | K | -2.9808 | |
| 6 | E | K | -3.8521 | |
| 7 | G | K | 0.0000 | |
| 8 | K | K | -3.5969 | |
| 9 | G | K | 0.0000 | |
| 10 | H | K | -2.5163 | |
| 1 | F | L | -0.5467 | |
| 2 | E | L | -2.8566 | |
| 3 | F | L | 0.0000 | |
| 4 | E | L | -4.3327 | |
| 5 | F | L | -3.3931 | |
| 6 | E | L | -4.0223 | |
| 7 | G | L | 0.0000 | |
| 8 | K | L | -4.0251 | |
| 9 | G | L | 0.0000 | |
| 10 | H | L | -2.4450 |