| Chain sequence(s) |
A: GGKGHGG
C: GGKGHGG B: GGKGHGG D: GGKGHGG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:14)
[INFO] Main: Simulation completed successfully. (00:00:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.7049 | |
| 2 | G | A | -3.7243 | |
| 3 | K | A | -3.9924 | |
| 4 | G | A | -3.8417 | |
| 5 | H | A | -2.9699 | |
| 6 | G | A | -2.6494 | |
| 7 | G | A | -1.1681 | |
| 1 | G | B | -1.6185 | |
| 2 | G | B | -2.5381 | |
| 3 | K | B | -3.3308 | |
| 4 | G | B | -2.7197 | |
| 5 | H | B | -2.4559 | |
| 6 | G | B | -2.1695 | |
| 7 | G | B | -1.3955 | |
| 1 | G | C | -2.4596 | |
| 2 | G | C | -3.4217 | |
| 3 | K | C | -4.1152 | |
| 4 | G | C | -3.5520 | |
| 5 | H | C | -3.2675 | |
| 6 | G | C | -2.8357 | |
| 7 | G | C | -1.6267 | |
| 1 | G | D | -1.7741 | |
| 2 | G | D | -2.3965 | |
| 3 | K | D | -3.6304 | |
| 4 | G | D | -3.8990 | |
| 5 | H | D | -3.4453 | |
| 6 | G | D | -3.0532 | |
| 7 | G | D | -2.7162 |