Project name: 4_3

Status: done

Started: 2025-02-27 09:32:33
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Chain sequence(s) A: MGSHHHHHHMKKDDQIAAAIALRGMAKDGKFAVKGGGGSEAAAKGGGGSQNKNDQIAAAIVLRGLAKGGKFANAGGGGSEAAAKGGGGSKKKNDQIAAALVLRGVAKSGKFAGAGGGGSEAAAKGGGGSITRNDEIAAAIVLRGMAKGGRFFASGGG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:51)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:51)
Show buried residues

Minimal score value
-4.5224
Maximal score value
2.8467
Average score
-1.1376
Total score value
-178.5992

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.5882
2 G A -0.9232
3 S A -1.1349
4 H A -2.3416
5 H A -2.8043
6 H A -3.1573
7 H A -3.0935
8 H A -3.6075
9 H A -3.6681
10 M A -2.7020
11 K A -3.4452
12 K A -3.8344
13 D A -3.3197
14 D A -2.5888
15 Q A -1.4518
16 I A -0.0853
17 A A -0.0024
18 A A 0.0000
19 A A 0.7837
20 I A 1.5003
21 A A 0.8076
22 L A 0.0000
23 R A -1.7954
24 G A -1.1407
25 M A -1.5731
26 A A 0.0000
27 K A -3.9056
28 D A -3.9858
29 G A 0.0000
30 K A -2.6414
31 F A -0.8543
32 A A -0.8267
33 V A -0.5727
34 K A -2.0645
35 G A -1.7585
36 G A -1.4406
37 G A 0.0000
38 G A -1.0912
39 S A -0.8418
40 E A 0.0000
41 A A -1.0474
42 A A -0.8579
43 A A -1.3280
44 K A -2.0514
45 G A -1.3873
46 G A -1.4973
47 G A -1.5321
48 G A 0.0000
49 S A -1.8081
50 Q A -3.5636
51 N A -3.9071
52 K A -4.5224
53 N A -3.1672
54 D A -2.4635
55 Q A 0.0000
56 I A -0.3168
57 A A 0.6831
58 A A 0.0000
59 A A 0.0000
60 I A 2.8467
61 V A 2.5080
62 L A 0.0000
63 R A 0.3701
64 G A -0.0749
65 L A -0.5138
66 A A 0.0000
67 K A -2.3365
68 G A -2.0588
69 G A -1.2863
70 K A -1.8070
71 F A -0.6693
72 A A -0.9006
73 N A -1.0280
74 A A -1.2583
75 G A -1.5357
76 G A -1.3153
77 G A -1.1783
78 G A -1.3249
79 S A -1.6172
80 E A -2.3585
81 A A -1.3636
82 A A 0.0000
83 A A -1.7196
84 K A -2.3474
85 G A 0.0000
86 G A 0.0000
87 G A -1.7145
88 G A -2.1457
89 S A -2.6640
90 K A -3.3601
91 K A -3.3288
92 K A -2.7480
93 N A 0.0000
94 D A -2.5283
95 Q A -1.8861
96 I A 0.0000
97 A A 0.0000
98 A A 0.1178
99 A A 0.0000
100 L A 0.0000
101 V A 2.4235
102 L A 1.8871
103 R A 0.8000
104 G A 0.9203
105 V A 1.7094
106 A A 0.1428
107 K A -1.8695
108 S A -1.7312
109 G A -1.7759
110 K A -2.1833
111 F A -0.8085
112 A A -1.0303
113 G A -0.8544
114 A A 0.0000
115 G A -1.1523
116 G A -1.4517
117 G A -1.4591
118 G A -1.5288
119 S A -1.5191
120 E A -2.6541
121 A A -1.8825
122 A A -1.5351
123 A A -1.8443
124 K A -2.2117
125 G A -1.7754
126 G A -1.5574
127 G A -1.9143
128 G A -1.4632
129 S A -0.8385
130 I A -0.3783
131 T A -1.0099
132 R A -2.5295
133 N A -2.4969
134 D A -1.7475
135 E A 0.0000
136 I A -0.8410
137 A A 0.0000
138 A A 0.0000
139 A A 0.0000
140 I A 0.0247
141 V A 0.0000
142 L A 0.0603
143 R A -0.8341
144 G A 0.0000
145 M A 0.0000
146 A A -1.3664
147 K A -2.2523
148 G A -1.6396
149 G A -1.1092
150 R A -1.3627
151 F A -0.0007
152 F A -0.0200
153 A A -0.5408
154 S A -1.0183
155 G A -1.4646
156 G A -1.0399
157 G A -0.9086
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Laboratory of Theory of Biopolymers 2018