Project name: query_structure

Status: done

Started: 2026-03-17 00:43:05
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVSNAYMEWYRQAPGKEREWVAAIESNGWWTYYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDVGNRQQTYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:40)
Show buried residues

Minimal score value
-3.6042
Maximal score value
1.2914
Average score
-0.9129
Total score value
-109.5489

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4767
2 V A -0.7218
3 Q A -0.7511
4 L A 0.0000
5 V A 1.2914
6 E A 0.0000
7 S A -0.5366
8 G A -1.0501
9 G A -0.8158
10 G A -0.0735
11 L A 1.0169
12 V A -0.0249
13 Q A -1.2756
14 A A -1.4910
15 G A -1.3784
16 G A -0.9022
17 S A -1.2746
18 L A -0.9934
19 R A -2.2741
20 L A 0.0000
21 S A -0.4131
22 C A 0.0000
23 A A -0.0160
24 A A 0.0000
25 S A -0.7150
26 G A -1.1024
27 F A 0.0000
28 P A -1.0684
29 V A 0.0000
30 S A -1.4414
31 N A -1.4847
32 A A 0.0000
33 Y A -1.1072
34 M A 0.0000
35 E A 0.0000
36 W A 0.0000
37 Y A -0.3867
38 R A -1.2550
39 Q A -2.1818
40 A A -2.0868
41 P A -1.4670
42 G A -1.9908
43 K A -3.3991
44 E A -3.6042
45 R A -2.8310
46 E A -1.7870
47 W A -0.4848
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 E A -0.7766
53 S A -1.2258
54 N A -1.2840
55 G A -0.5288
56 W A 1.0027
57 W A 1.2543
58 T A 0.9665
59 Y A 0.6213
60 Y A -0.4441
61 A A -1.1341
62 D A -2.3210
63 S A -1.7130
64 V A 0.0000
65 K A -2.5138
66 G A -1.7722
67 R A -1.5431
68 F A 0.0000
69 T A -0.8798
70 I A 0.0000
71 S A -0.5786
72 R A -1.4767
73 D A -2.0150
74 N A -2.6075
75 A A -1.7735
76 K A -2.4822
77 N A -1.9211
78 T A 0.0000
79 V A 0.0000
80 Y A -0.7856
81 L A 0.0000
82 Q A -1.5934
83 M A 0.0000
84 N A -1.4174
85 S A -1.2298
86 L A 0.0000
87 K A -2.5411
88 P A -2.0142
89 E A -2.4166
90 D A 0.0000
91 T A -1.0175
92 A A 0.0000
93 V A -0.6085
94 Y A 0.0000
95 Y A -0.1437
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -2.2286
100 D A -2.7999
101 V A -1.7444
102 G A -1.9633
103 N A -2.8485
104 R A -3.6017
105 Q A -3.0185
106 Q A -2.8752
107 T A -1.9542
108 Y A -0.8367
109 D A -1.7683
110 Y A -0.4460
111 W A 0.0474
112 G A 0.1186
113 Q A -0.8840
114 G A 0.0000
115 T A 0.0000
116 Q A -1.1714
117 V A 0.0000
118 T A -0.3247
119 V A 0.0000
120 S A -0.7817
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Laboratory of Theory of Biopolymers 2018