Project name: Lad-XTEN-SnapTag

Status: done

Started: 2025-06-30 19:26:28
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCSGSETPGTSESATPESGLPTSNPAQELEARQLGRTTRDDLINGNSASCADVIFIYARGSTETGNLGTLGPSIASNLESAFGKDGVWIQGVGGAYRATLGDNALPRGTSSAAIREMLGLFQQANTKCPDATLIAGGYSQGAALAAASIEDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAPHLAYGPDARGPAPEFLIEKVRAVRGSA
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:09:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:09:19)
Show buried residues

Minimal score value
-3.5444
Maximal score value
1.1584
Average score
-0.6481
Total score value
-436.1701

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.3717
2 V A -0.6884
3 Q A -1.2670
4 L A 0.0000
5 V A 0.0454
6 Q A 0.0000
7 S A -0.5456
8 G A -0.9055
9 A A -0.9122
10 E A -1.4984
11 V A -0.8152
12 K A -1.6673
13 K A -2.5578
14 P A -2.4140
15 G A -2.0070
16 A A -1.6275
17 S A -1.7156
18 V A 0.0000
19 K A -1.9884
20 V A 0.0000
21 S A -0.5261
22 C A 0.0000
23 K A -0.6246
24 A A 0.0000
25 S A -0.7055
26 G A -0.9013
27 L A -0.7674
28 T A -0.9175
29 I A 0.0000
30 E A -2.7040
31 D A -2.5460
32 Y A -1.2118
33 Y A -0.5341
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.6091
40 A A -0.9945
41 P A -0.9951
42 G A -1.2129
43 Q A -1.7430
44 G A -1.1277
45 L A 0.0000
46 E A -0.6904
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A -0.2638
51 I A 0.0000
52 D A -2.1466
53 P A 0.0000
54 E A -3.5444
55 N A -2.9993
56 G A -2.4554
57 D A -2.6613
58 T A -1.2921
59 E A -0.8865
60 Y A -0.6983
61 G A 0.0000
62 P A -1.6261
63 K A -2.2546
64 F A 0.0000
65 Q A -2.1407
66 G A -1.6643
67 R A -1.7092
68 V A 0.0000
69 T A -0.7579
70 M A 0.0000
71 T A -0.7461
72 R A -1.4405
73 D A -1.0084
74 T A -0.9840
75 S A -0.0706
76 I A 0.4792
77 N A -0.4178
78 T A 0.0000
79 A A 0.0000
80 Y A -0.6394
81 M A 0.0000
82 E A -1.2552
83 L A 0.0000
84 S A -1.8174
85 R A -2.7425
86 L A 0.0000
87 R A -3.3850
88 S A -2.3331
89 D A -2.5386
90 D A 0.0000
91 T A -0.9737
92 A A 0.0000
93 V A 0.1982
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A 0.0000
101 A A -0.1737
102 H A -0.5403
103 Y A 0.7968
104 G A 0.2201
105 T A 0.0000
106 W A 0.0000
107 F A 0.0000
108 A A 0.2836
109 Y A 0.1144
110 W A -0.1497
111 G A 0.0000
112 Q A -1.3408
113 G A -0.5592
114 T A 0.0000
115 L A -0.1447
116 V A 0.0000
117 T A -0.9664
118 V A 0.0000
119 S A -1.3569
120 S A -0.9447
121 A A -0.5885
122 S A -0.6589
123 T A -0.8344
124 K A -1.1335
125 G A -1.3017
126 P A 0.0000
127 S A -0.3302
128 V A 0.0000
129 F A 0.0000
130 P A -1.0660
131 L A 0.0000
132 A A -1.2608
133 P A 0.0000
134 S A -0.8523
135 S A -0.4385
136 K A -0.7262
137 S A 0.0000
138 T A -0.5992
139 S A -0.6583
140 G A -0.8011
141 G A -0.8694
142 T A -0.6074
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3186
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4891
156 P A -0.7562
157 V A 0.0000
158 T A -0.6390
159 V A -0.1746
160 S A -0.3536
161 W A 0.0000
162 N A -0.7063
163 S A -0.6139
164 G A -0.4527
165 A A -0.1993
166 L A 0.0431
167 T A -0.1355
168 S A -0.1528
169 G A -0.1561
170 V A 0.2194
171 H A -0.2921
172 T A 0.0411
173 F A 0.0000
174 P A -0.3293
175 A A 0.2547
176 V A 0.5449
177 L A 1.1584
178 Q A 0.2902
179 S A -0.0719
180 S A -0.2093
181 G A 0.0320
182 L A 0.1632
183 Y A 0.4803
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1170
191 V A 0.0000
192 P A -0.6123
193 S A -0.5746
194 S A -0.5828
195 S A -0.5713
196 L A -0.7828
197 G A -0.9526
198 T A -0.6876
199 Q A -1.1710
200 T A -1.1181
201 Y A 0.0000
202 I A -1.2843
203 C A 0.0000
204 N A -1.4254
205 V A 0.0000
206 N A -1.9658
207 H A 0.0000
208 K A -2.9247
209 P A -1.8084
210 S A -1.8815
211 N A -2.5585
212 T A -2.0655
213 K A -2.6866
214 V A -1.5066
215 D A -2.3512
216 K A -2.0644
217 K A -2.4979
218 V A 0.0000
219 E A -2.8782
220 P A -1.8593
221 K A -2.2287
222 S A -1.0406
223 C A -0.0241
224 S A -0.7147
225 G A -1.0613
226 S A -1.3633
227 E A -2.3067
228 T A -1.3917
229 P A -1.1664
230 G A -1.3217
231 T A -1.0268
232 S A -1.3740
233 E A -2.1116
234 S A -1.2031
235 A A -1.0271
236 T A -1.0084
237 P A -1.1760
238 E A -1.9048
239 S A -1.0560
240 G A -0.4251
241 L A 0.7328
242 P A 0.0605
243 T A -0.3923
244 S A -0.9200
245 N A -1.8023
246 P A -1.3354
247 A A -1.3587
248 Q A -2.3861
249 E A -2.5704
250 L A 0.0000
251 E A -2.3344
252 A A -1.2158
253 R A -0.6898
254 Q A -1.1030
255 L A 0.4184
256 G A 0.0000
257 R A -1.7742
258 T A -0.9373
259 T A -0.9401
260 R A -0.7332
261 D A -0.6489
262 D A -0.9092
263 L A 0.0000
264 I A 0.4903
265 N A -1.0705
266 G A -1.0265
267 N A -1.5150
268 S A -1.0662
269 A A -0.5426
270 S A -1.0092
271 C A -1.2559
272 A A 0.0000
273 D A -2.1778
274 V A 0.0000
275 I A 0.0000
276 F A 0.0000
277 I A 0.0000
278 Y A 0.0000
279 A A 0.0000
280 R A -0.4242
281 G A 0.0000
282 S A 0.0000
283 T A -0.7543
284 E A 0.0000
285 T A -0.8240
286 G A -1.0238
287 N A 0.0000
288 L A 0.0000
289 G A 0.0000
290 T A -0.1673
291 L A 0.0000
292 G A 0.0000
293 P A -0.5624
294 S A 0.0000
295 I A 0.0000
296 A A 0.0000
297 S A -0.7220
298 N A -0.6134
299 L A 0.0000
300 E A 0.0000
301 S A -0.6459
302 A A -0.3469
303 F A -0.8576
304 G A -1.5527
305 K A -2.6725
306 D A -2.8916
307 G A -1.8896
308 V A 0.0000
309 W A 0.0000
310 I A 0.0000
311 Q A 0.0000
312 G A 0.0000
313 V A 0.0000
314 G A -0.9718
315 G A -1.0023
316 A A -1.2247
317 Y A 0.0000
318 R A -1.9473
319 A A 0.0000
320 T A -0.6035
321 L A -0.7888
322 G A -0.5001
323 D A 0.0000
324 N A 0.0000
325 A A -0.0015
326 L A 0.1907
327 P A -0.2684
328 R A -0.6392
329 G A 0.0000
330 T A 0.0000
331 S A 0.0000
332 S A -0.7731
333 A A -1.0903
334 A A 0.0000
335 I A 0.0000
336 R A -2.3040
337 E A -1.6471
338 M A 0.0000
339 L A -1.6599
340 G A -1.3806
341 L A 0.0000
342 F A 0.0000
343 Q A -1.8845
344 Q A -0.9771
345 A A 0.0000
346 N A -1.4295
347 T A -1.1132
348 K A -1.0685
349 C A 0.0000
350 P A -1.6835
351 D A -2.4034
352 A A 0.0000
353 T A 0.0000
354 L A 0.0000
355 I A 0.0000
356 A A 0.0000
357 G A 0.0000
358 G A 0.0000
359 Y A 0.0000
360 S A 0.0000
361 Q A 0.0000
362 G A 0.0000
363 A A 0.0000
364 A A 0.0000
365 L A 0.0000
366 A A 0.0000
367 A A 0.0000
368 A A 0.0000
369 S A 0.0000
370 I A 0.0000
371 E A -2.1736
372 D A -2.8924
373 L A 0.0000
374 D A -2.7616
375 S A -2.1156
376 A A -1.3147
377 I A 0.0000
378 R A 0.0000
379 D A -2.3576
380 K A -1.4288
381 I A 0.0000
382 A A 0.0000
383 G A 0.0000
384 T A 0.0000
385 V A 0.0000
386 L A 0.0000
387 F A 0.0000
388 G A 0.0000
389 Y A 0.0000
390 T A 0.0000
391 K A -1.2637
392 N A -1.3496
393 L A -1.0343
394 Q A -1.9215
395 N A -2.2364
396 R A -2.7275
397 G A -1.9714
398 R A -2.9739
399 I A 0.0000
400 P A -1.8997
401 N A -2.0582
402 Y A 0.0000
403 P A -1.5741
404 A A -1.6853
405 D A -2.3168
406 R A -1.8154
407 T A 0.0000
408 K A -1.1144
409 V A -0.4289
410 F A 0.0000
411 C A -0.1067
412 N A 0.0000
413 T A -0.3925
414 G A -0.3146
415 D A 0.0000
416 L A 0.7426
417 V A 0.0000
418 C A 0.0000
419 T A -0.1045
420 G A -0.0839
421 S A 0.5026
422 L A 0.2571
423 I A 0.0221
424 V A -0.1340
425 A A 0.1895
426 A A -0.0861
427 P A -0.4099
428 H A 0.0000
429 L A 0.0712
430 A A -0.4809
431 Y A 0.0000
432 G A -0.2927
433 P A 0.0000
434 D A 0.0000
435 A A 0.0000
436 R A -0.9980
437 G A 0.0000
438 P A 0.0000
439 A A 0.0000
440 P A 0.0000
441 E A -1.2554
442 F A 0.0000
443 L A 0.0000
444 I A -1.1510
445 E A -2.0798
446 K A -1.4304
447 V A 0.0000
448 R A -1.1334
449 A A -0.3604
450 V A 0.6810
451 R A -0.7867
452 G A -0.6770
453 S A -0.6867
454 A A -0.3773
1 D B -1.3315
2 V B 0.0000
3 V B 0.6805
4 M B 0.0000
5 T B -0.4077
6 Q B 0.0000
7 S B -0.2079
8 P B 0.3354
9 L B 1.0980
10 S B 0.1371
11 L B -0.1461
12 P B -0.7552
13 V B 0.0000
14 T B -0.9514
15 L B -0.5296
16 G B 0.0000
17 Q B -1.7961
18 P B -1.8658
19 A B 0.0000
20 S B -0.8120
21 I B 0.0000
22 S B -0.9189
23 C B 0.0000
24 R B -2.3013
25 S B 0.0000
26 S B -0.9949
27 Q B -1.4928
28 S B -0.8093
29 L B 0.0000
30 L B 0.7848
31 H B -0.1064
32 S B -0.3591
33 S B -0.5112
34 G B -0.5204
35 N B -0.4360
36 T B 0.0824
37 Y B 0.0721
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B 0.0000
44 R B -1.6879
45 P B -1.3927
46 G B -1.5906
47 Q B -2.0023
48 S B -1.3017
49 P B 0.0000
50 R B -1.0618
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.0650
55 K B -0.3910
56 I B -0.3626
57 S B -0.5606
58 T B -0.5988
59 R B -1.2810
60 F B 0.0000
61 S B -0.6495
62 G B -0.9566
63 V B 0.0000
64 P B -1.3842
65 D B -2.3995
66 R B -2.1145
67 F B 0.0000
68 S B -1.3420
69 G B -0.8402
70 S B -0.8702
71 G B -1.0096
72 S B -0.6499
73 G B -0.6328
74 T B -1.4295
75 D B -2.0951
76 F B 0.0000
77 T B -1.1134
78 L B 0.0000
79 K B -1.9470
80 I B 0.0000
81 S B -2.2682
82 R B -2.9027
83 V B 0.0000
84 E B -2.2226
85 A B -2.1437
86 E B -2.8347
87 D B 0.0000
88 V B 0.0000
89 G B 0.0000
90 V B -0.2011
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B -0.0658
99 V B 0.6116
100 P B -0.1441
101 Y B 0.3114
102 T B 0.0929
103 F B 0.0000
104 G B 0.0000
105 G B -0.4119
106 G B -0.3188
107 T B 0.0000
108 K B -0.6905
109 V B 0.0000
110 E B -1.1463
111 I B 0.0000
112 K B -1.0480
113 R B -0.7850
114 T B -0.1137
115 V B 0.2296
116 A B -0.0685
117 A B -0.1256
118 P B 0.0000
119 S B -0.1772
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.4310
125 P B 0.0000
126 S B -1.6583
127 D B -2.9006
128 E B -2.5301
129 Q B 0.0000
130 L B -2.1633
131 K B -2.7391
132 S B -1.6992
133 G B -1.2336
134 T B -0.9478
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -0.7548
144 F B 0.0000
145 Y B 0.0000
146 P B -1.5419
147 R B -2.6699
148 E B -3.0587
149 A B -2.2637
150 K B -2.4314
151 V B -1.0650
152 Q B -0.6518
153 W B 0.0000
154 K B -0.2174
155 V B 0.0000
156 D B -0.6943
157 N B -0.4519
158 A B 0.1208
159 L B 0.6899
160 Q B -0.1239
161 S B -0.4454
162 G B -0.8600
163 N B -0.7453
164 S B -0.9600
165 Q B -1.0986
166 E B -1.4061
167 S B -0.7896
168 V B -0.7297
169 T B -1.1451
170 E B -2.2780
171 Q B 0.0000
172 D B -2.1657
173 S B -2.4910
174 K B -2.7670
175 D B -1.8797
176 S B 0.0000
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.5128
184 L B 0.0000
185 T B -0.3667
186 L B -0.5310
187 S B -1.0781
188 K B -1.9665
189 A B -1.6548
190 D B -2.0733
191 Y B 0.0000
192 E B -2.7646
193 K B -2.8499
194 H B -1.7681
195 K B 0.0000
196 V B 0.0000
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.6239
201 V B 0.0000
202 T B -1.2261
203 H B 0.0000
204 Q B -1.7572
205 G B -0.4697
206 L B -0.2596
207 S B -0.4816
208 S B -0.4209
209 P B -0.6196
210 V B 0.0201
211 T B -0.4381
212 K B -0.7579
213 S B 0.0000
214 F B 0.0000
215 N B 0.0000
216 R B 0.0000
217 G B -0.7265
218 E B -0.3849
219 C B 0.0538
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Laboratory of Theory of Biopolymers 2018