Project name: query_structure

Status: done

Started: 2026-03-16 19:57:35
Settings
Chain sequence(s) A: CGPGRFQCESGQCIPATWVCDGENDCVDDSDEKSCATTAPTCGSGQFRCSNGNCLPLRLGCDGVDDCGDSSDEPLDPCAATVRT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:26)
Show buried residues

Minimal score value
-3.3144
Maximal score value
1.0652
Average score
-1.0014
Total score value
-84.1214

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 C A -0.2709
2 G A -0.8173
3 P A -0.9328
4 G A -1.3179
5 R A -1.5943
6 F A -0.9576
7 Q A -1.7842
8 C A 0.0000
9 E A -2.5025
10 S A -1.3937
11 G A -1.3019
12 Q A -1.0122
13 C A -0.8359
14 I A 0.0000
15 P A -0.4808
16 A A -0.5788
17 T A -0.2133
18 W A -0.6029
19 V A -1.0668
20 C A -1.5897
21 D A -2.4888
22 G A -2.4557
23 E A -3.3144
24 N A -2.8521
25 D A -1.5155
26 C A 0.0000
27 V A 0.5661
28 D A -1.0021
29 D A -1.9902
30 S A 0.0000
31 D A 0.0000
32 E A -2.4479
33 K A -2.4450
34 S A -1.2853
35 C A -0.8248
36 A A -0.4564
37 T A -0.3095
38 T A -0.0619
39 A A -0.2364
40 P A -0.8299
41 T A -0.4184
42 C A -0.6240
43 G A -0.5313
44 S A -0.4138
45 G A -0.6192
46 Q A -0.8016
47 F A -0.7501
48 R A -1.5073
49 C A 0.0000
50 S A -1.8513
51 N A -2.4684
52 G A -1.9215
53 N A -2.1723
54 C A -1.0355
55 L A -0.6550
56 P A -0.4788
57 L A -0.2199
58 R A -1.6036
59 L A -1.1564
60 G A 0.0000
61 C A -0.6637
62 D A -2.1350
63 G A -1.2427
64 V A -0.7170
65 D A -2.6274
66 D A -2.2993
67 C A 0.0000
68 G A -2.2618
69 D A -2.9903
70 S A -2.0548
71 S A -1.8832
72 D A 0.0000
73 E A -1.2992
74 P A -0.4404
75 L A 0.7499
76 D A -1.1938
77 P A -0.7029
78 C A 0.0000
79 A A 0.1782
80 A A 0.0310
81 T A 0.2465
82 V A 1.0652
83 R A -1.0164
84 T A -0.4326
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018