| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVTSTSMFWYRQAPGKEREWVAAIDSKGAHTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGWWYGVYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:44)
[INFO] Main: Simulation completed successfully. (00:01:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2872 | |
| 2 | V | A | -0.3935 | |
| 3 | Q | A | -0.4604 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.1886 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5913 | |
| 8 | G | A | -1.0617 | |
| 9 | G | A | -0.8515 | |
| 10 | G | A | -0.0484 | |
| 11 | L | A | 1.0078 | |
| 12 | V | A | -0.0346 | |
| 13 | Q | A | -1.2659 | |
| 14 | A | A | -1.4801 | |
| 15 | G | A | -1.3891 | |
| 16 | G | A | -0.9158 | |
| 17 | S | A | -1.2523 | |
| 18 | L | A | -0.9393 | |
| 19 | R | A | -2.1519 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3800 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0224 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.4802 | |
| 26 | G | A | -0.8073 | |
| 27 | F | A | -0.3095 | |
| 28 | P | A | -0.7870 | |
| 29 | V | A | 0.0000 | |
| 30 | T | A | -1.1762 | |
| 31 | S | A | -0.5888 | |
| 32 | T | A | 0.0000 | |
| 33 | S | A | -0.5849 | |
| 34 | M | A | 0.0000 | |
| 35 | F | A | 0.1807 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4222 | |
| 38 | R | A | -1.3364 | |
| 39 | Q | A | -2.2023 | |
| 40 | A | A | -2.1025 | |
| 41 | P | A | -1.4841 | |
| 42 | G | A | -1.9989 | |
| 43 | K | A | -3.4289 | |
| 44 | E | A | -3.7035 | |
| 45 | R | A | -3.0672 | |
| 46 | E | A | -1.8632 | |
| 47 | W | A | -0.5512 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | D | A | -1.4572 | |
| 53 | S | A | -1.5244 | |
| 54 | K | A | -2.2893 | |
| 55 | G | A | -1.7355 | |
| 56 | A | A | -1.1873 | |
| 57 | H | A | -1.6783 | |
| 58 | T | A | -1.0523 | |
| 59 | H | A | -1.5826 | |
| 60 | Y | A | -1.3254 | |
| 61 | A | A | -1.5348 | |
| 62 | D | A | -2.5444 | |
| 63 | S | A | -1.7539 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7749 | |
| 66 | G | A | -1.8070 | |
| 67 | R | A | -1.5492 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9946 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6867 | |
| 72 | R | A | -1.4623 | |
| 73 | D | A | -1.9837 | |
| 74 | N | A | -2.5588 | |
| 75 | A | A | -1.7503 | |
| 76 | K | A | -2.4734 | |
| 77 | N | A | -1.8332 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6800 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2503 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4986 | |
| 85 | S | A | -1.2925 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5286 | |
| 88 | P | A | -2.0023 | |
| 89 | E | A | -2.4102 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0189 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7644 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2083 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -0.0487 | |
| 100 | D | A | 0.7410 | |
| 101 | Y | A | 1.9713 | |
| 102 | G | A | 1.8807 | |
| 103 | W | A | 2.2851 | |
| 104 | W | A | 2.3592 | |
| 105 | Y | A | 2.0627 | |
| 106 | G | A | 1.4479 | |
| 107 | V | A | 2.1894 | |
| 108 | Y | A | 1.0161 | |
| 109 | D | A | -0.7246 | |
| 110 | Y | A | -0.1273 | |
| 111 | W | A | 0.0941 | |
| 112 | G | A | 0.0871 | |
| 113 | Q | A | -0.8968 | |
| 114 | G | A | -0.5376 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2233 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3429 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7749 |