Project name: query_structure

Status: done

Started: 2026-03-17 00:44:32
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVTSTSMFWYRQAPGKEREWVAAIDSKGAHTHYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGWWYGVYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:45)
Show buried residues

Minimal score value
-3.7035
Maximal score value
2.3592
Average score
-0.6731
Total score value
-80.7777

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2872
2 V A -0.3935
3 Q A -0.4604
4 L A 0.0000
5 V A 1.1886
6 E A 0.0000
7 S A -0.5913
8 G A -1.0617
9 G A -0.8515
10 G A -0.0484
11 L A 1.0078
12 V A -0.0346
13 Q A -1.2659
14 A A -1.4801
15 G A -1.3891
16 G A -0.9158
17 S A -1.2523
18 L A -0.9393
19 R A -2.1519
20 L A 0.0000
21 S A -0.3800
22 C A 0.0000
23 A A -0.0224
24 A A 0.0000
25 S A -0.4802
26 G A -0.8073
27 F A -0.3095
28 P A -0.7870
29 V A 0.0000
30 T A -1.1762
31 S A -0.5888
32 T A 0.0000
33 S A -0.5849
34 M A 0.0000
35 F A 0.1807
36 W A 0.0000
37 Y A -0.4222
38 R A -1.3364
39 Q A -2.2023
40 A A -2.1025
41 P A -1.4841
42 G A -1.9989
43 K A -3.4289
44 E A -3.7035
45 R A -3.0672
46 E A -1.8632
47 W A -0.5512
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 D A -1.4572
53 S A -1.5244
54 K A -2.2893
55 G A -1.7355
56 A A -1.1873
57 H A -1.6783
58 T A -1.0523
59 H A -1.5826
60 Y A -1.3254
61 A A -1.5348
62 D A -2.5444
63 S A -1.7539
64 V A 0.0000
65 K A -2.7749
66 G A -1.8070
67 R A -1.5492
68 F A 0.0000
69 T A -0.9946
70 I A 0.0000
71 S A -0.6867
72 R A -1.4623
73 D A -1.9837
74 N A -2.5588
75 A A -1.7503
76 K A -2.4734
77 N A -1.8332
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6800
81 L A 0.0000
82 Q A -1.2503
83 M A 0.0000
84 N A -1.4986
85 S A -1.2925
86 L A 0.0000
87 K A -2.5286
88 P A -2.0023
89 E A -2.4102
90 D A 0.0000
91 T A -1.0189
92 A A 0.0000
93 V A -0.7644
94 Y A 0.0000
95 Y A -0.2083
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -0.0487
100 D A 0.7410
101 Y A 1.9713
102 G A 1.8807
103 W A 2.2851
104 W A 2.3592
105 Y A 2.0627
106 G A 1.4479
107 V A 2.1894
108 Y A 1.0161
109 D A -0.7246
110 Y A -0.1273
111 W A 0.0941
112 G A 0.0871
113 Q A -0.8968
114 G A -0.5376
115 T A 0.0000
116 Q A -1.2233
117 V A 0.0000
118 T A -0.3429
119 V A 0.0000
120 S A -0.7749
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Laboratory of Theory of Biopolymers 2018