Project name: 7DUN

Status: done

Started: 2026-03-29 08:23:33
Settings
Chain sequence(s) H: EVQLLESGGGLVQPGGSLRLSCAVSGFTFNSFAMSWVRQAPGKGLEWVSAISGSGGGTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYFCAKDKILWFGEPVFDYWGQGTLVTVSS
L: EIVLTQSPATLSLSPGERATLSCRASQSVSSYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISSLEPEDFAVYYCQQRSNWPPTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:00)
Show buried residues

Minimal score value
-2.4402
Maximal score value
2.3726
Average score
-0.4699
Total score value
-107.6081

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9724
2 V H -0.9308
3 Q H -0.7288
4 L H 0.0000
5 L H 0.9637
6 E H 0.3121
7 S H -0.2604
8 G H -0.7120
9 G H 0.1513
11 G H 0.8632
12 L H 1.4288
13 V H -0.0082
14 Q H -1.2904
15 P H -1.5428
16 G H -1.3787
17 G H -1.1195
18 S H -1.1175
19 L H -0.7669
20 R H -1.5847
21 L H 0.0000
22 S H -0.3251
23 C H 0.0000
24 A H -0.1638
25 V H 0.0000
26 S H -0.8236
27 G H -1.1328
28 F H -0.4866
29 T H -0.3363
30 F H 0.0000
35 N H -1.0718
36 S H 0.2644
37 F H 1.1295
38 A H 0.0000
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.6528
45 A H -1.0270
46 P H -0.8266
47 G H -1.4858
48 K H -2.3993
49 G H -1.6050
50 L H 0.0000
51 E H -0.9139
52 W H 0.0000
53 V H 0.0000
54 S H 0.0000
55 A H 0.0000
56 I H 0.0000
57 S H 0.8042
58 G H 0.0000
59 S H -0.3423
62 G H -0.5738
63 G H -0.5137
64 G H -0.0714
65 T H 0.2263
66 Y H 0.3064
67 Y H -0.6370
68 A H 0.0000
69 D H -2.3954
70 S H -1.7002
71 V H 0.0000
72 K H -2.3937
74 G H -1.6435
75 R H -1.3861
76 F H 0.0000
77 T H -0.6947
78 I H 0.0000
79 S H -0.4502
80 R H -1.0295
81 D H -1.5229
82 N H -1.7513
83 S H -1.6294
84 K H -2.4219
85 N H -1.9171
86 T H -1.0453
87 L H 0.0000
88 Y H -0.4344
89 L H 0.0000
90 Q H -1.0012
91 M H 0.0000
92 N H -1.2669
93 S H -1.1904
94 L H 0.0000
95 R H -2.1647
96 A H -1.6544
97 E H -2.2025
98 D H 0.0000
99 T H -0.3585
100 A H 0.0000
101 V H 0.7402
102 Y H 0.0000
103 F H 0.0000
104 C H 0.0000
105 A H 0.0000
106 K H 0.0000
107 D H 0.0000
108 K H -0.0054
109 I H 1.1658
110 L H 1.8588
111 W H 2.3726
111A F H 2.2879
112A G H 0.4398
112 E H -0.5602
113 P H 0.0000
114 V H 0.0000
115 F H 0.0000
116 D H -0.2804
117 Y H 0.1049
118 W H -0.0711
119 G H 0.0000
120 Q H -0.9414
121 G H 0.0000
122 T H 0.5310
123 L H 1.5358
124 V H 0.0000
125 T H 0.3475
126 V H 0.0000
127 S H -0.6505
128 S H -0.4549
1 E L -1.5221
2 I L 0.0000
3 V L 0.7254
4 L L 0.0000
5 T L -0.7041
6 Q L 0.0000
7 S L -0.7715
8 P L -0.3478
9 A L -0.4263
10 T L -0.5247
11 L L -0.2803
12 S L -0.4739
13 L L -0.6367
14 S L -0.8641
15 P L -1.2225
16 G L -1.5324
17 E L -1.9397
18 R L -2.4402
19 A L 0.0000
20 T L -0.6540
21 L L 0.0000
22 S L -0.8476
23 C L 0.0000
24 R L -2.2687
25 A L 0.0000
26 S L -0.8527
27 Q L -1.4356
28 S L -1.1411
29 V L 0.0000
36 S L -0.3860
37 S L -0.2417
38 Y L 0.1782
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.1708
46 P L -0.9551
47 G L -1.3192
48 Q L -1.8035
49 A L -1.1218
50 P L 0.0000
51 R L -0.9344
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.6861
56 D L -0.8598
57 A L 0.0000
65 S L -1.1047
66 N L -1.7067
67 R L -1.7615
68 A L -1.1309
69 T L -0.7329
70 G L -0.6896
71 I L 0.0000
72 P L -0.4361
74 A L -0.3724
75 R L -0.6127
76 F L 0.0000
77 S L -0.6648
78 G L 0.0000
79 S L -0.7780
80 G L -0.9888
83 S L -0.9322
84 G L -0.9820
85 T L -1.6239
86 D L -2.0520
87 F L 0.0000
88 T L -0.7406
89 L L 0.0000
90 T L -0.5816
91 I L 0.0000
92 S L -1.1975
93 S L -1.4759
94 L L 0.0000
95 E L -1.7073
96 P L -1.0215
97 E L -1.7122
98 D L 0.0000
99 F L -0.3219
100 A L 0.0000
101 V L -0.3292
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 R L -0.6064
108 S L -0.4561
109 N L -1.1165
114 W L -0.3609
115 P L -0.7242
116 P L 0.0000
117 T L -0.1866
118 F L 0.0074
119 G L 0.0000
120 Q L -1.2684
121 G L 0.0000
122 T L 0.0000
123 K L -0.7671
124 V L 0.0000
125 E L -0.5045
126 I L 0.6512
127 K L -0.9727
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018