Project name: ECD_409_1st

Status: done

Started: 2024-06-11 20:54:48
Settings
Chain sequence(s) A: NFTLPPNFGKRPTDLELSVKLVEMLEAIMYATGCTLEESKIKEVLEKPKIIDLALEAQFTLMPKTALELAKVFRLKNIEALAILVCGCSPPGNLSNLFSLKVKGDLNASLVMTTCSTICARERMPELLEKYSRGIYDGDLKDKVPYKGIDISLKLVLKPCTEGIKLKSKRPQLLRKELKELEEKIKKLTEEVTKLSKENVGKSIMFAMTPKILKTSSLMPKRGYKLGLELSEKACLNGRCRRTVSLETGCRNVQLCSTILNVAFPPEVIGPLFFFPLLYMEQQLKEGEEIVKKIKEEEKKKE
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:07:36)
Show buried residues

Minimal score value
-5.3521
Maximal score value
1.8388
Average score
-1.2228
Total score value
-369.2772

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 N A -0.7271
2 F A 0.4828
3 T A -0.0496
4 L A -0.0872
5 P A -0.1849
6 P A -1.0028
7 N A -1.9377
8 F A -1.0086
9 G A -1.2428
10 K A -2.1102
11 R A -1.5366
12 P A -0.9008
13 T A -0.7645
14 D A -0.7115
15 L A 0.4043
16 E A -0.3802
17 L A -0.4234
18 S A 0.4931
19 V A 1.1454
20 K A -0.3386
21 L A 0.1761
22 V A 0.2970
23 E A -0.9426
24 M A -0.9226
25 L A -0.1459
26 E A -1.3664
27 A A 0.0000
28 I A 0.0000
29 M A 0.0000
30 Y A -0.6636
31 A A -0.8170
32 T A 0.0000
33 G A 0.0000
34 C A 0.0000
35 T A -0.1509
36 L A 0.0000
37 E A -2.8545
38 E A -3.5682
39 S A -2.9785
40 K A -3.7526
41 I A -2.8149
42 K A -3.7919
43 E A -4.0196
44 V A -2.4472
45 L A -1.6202
46 E A -3.1198
47 K A -2.7374
48 P A -1.8413
49 K A -2.0013
50 I A 0.0000
51 I A -1.2456
52 D A -2.4166
53 L A 0.0000
54 A A 0.0000
55 L A -1.0135
56 E A -1.4753
57 A A 0.0000
58 Q A 0.0000
59 F A 0.0000
60 T A -0.5777
61 L A -0.3971
62 M A 0.0000
63 P A 0.0000
64 K A -1.4298
65 T A 0.0000
66 A A 0.0000
67 L A -1.1883
68 E A -2.2174
69 L A 0.0000
70 A A 0.0000
71 K A -2.1628
72 V A -0.0015
73 F A -1.1663
74 R A -2.5818
75 L A -1.9891
76 K A -2.6828
77 N A -1.9742
78 I A -0.4343
79 E A 0.0000
80 A A 0.0000
81 L A 0.0000
82 A A 0.0000
83 I A 0.0000
84 L A 0.0000
85 V A 0.0000
86 C A 0.0000
87 G A 0.0000
88 C A 0.0000
89 S A 0.0000
90 P A 0.0000
91 P A 0.0000
92 G A 0.0000
93 N A -0.0053
94 L A 0.3291
95 S A 0.0000
96 N A 0.0000
97 L A 0.2404
98 F A 0.0000
99 S A 0.0000
100 L A -0.5827
101 K A -1.7408
102 V A 0.0000
103 K A -2.5658
104 G A 0.0000
105 D A -1.6144
106 L A 0.0000
107 N A -1.2269
108 A A 0.0000
109 S A 0.0000
110 L A 0.0000
111 V A 0.0000
112 M A 0.0000
113 T A 0.0000
114 T A 0.3960
115 C A 0.4667
116 S A 0.0000
117 T A 0.0000
118 I A -0.0155
119 C A -0.4818
120 A A 0.0000
121 R A -2.2645
122 E A -2.9804
123 R A -2.5504
124 M A 0.0000
125 P A 0.0000
126 E A -3.4204
127 L A 0.0000
128 L A 0.0000
129 E A -3.7168
130 K A -2.5428
131 Y A -1.5083
132 S A 0.0000
133 R A -2.9124
134 G A -1.6298
135 I A -1.1599
136 Y A -1.6333
137 D A -2.4573
138 G A -2.5363
139 D A -3.6492
140 L A 0.0000
141 K A -3.8642
142 D A -3.0849
143 K A -2.0153
144 V A 0.0000
145 P A -0.8289
146 Y A -0.8423
147 K A -1.7181
148 G A -1.0482
149 I A 0.0000
150 D A -1.9625
151 I A -0.5765
152 S A -0.5319
153 L A -0.8803
154 K A -1.6321
155 L A -0.9367
156 V A 0.0000
157 L A -0.8984
158 K A -2.3563
159 P A 0.0000
160 C A 0.0000
161 T A -1.8847
162 E A -2.6077
163 G A 0.0000
164 I A 0.0000
165 K A -3.0894
166 L A -2.4414
167 K A -2.4327
168 S A -2.8203
169 K A -3.2516
170 R A -3.2844
171 P A -2.5091
172 Q A -2.5205
173 L A -1.8221
174 L A -2.3373
175 R A -3.3892
176 K A -3.6568
177 E A -2.9468
178 L A -3.1199
179 K A -4.7926
180 E A -4.9474
181 L A 0.0000
182 E A -4.7631
183 E A -5.1014
184 K A -4.2519
185 I A -3.7504
186 K A -4.5488
187 K A -4.3182
188 L A -3.0876
189 T A -2.7930
190 E A -3.6653
191 E A -3.3199
192 V A 0.0000
193 T A -2.6377
194 K A -3.5290
195 L A 0.0000
196 S A -2.2790
197 K A -3.5957
198 E A -3.3558
199 N A 0.0000
200 V A -1.3353
201 G A -2.2165
202 K A -1.9104
203 S A -0.1879
204 I A 0.0000
205 M A 0.8313
206 F A 1.8388
207 A A 0.8522
208 M A 0.0000
209 T A -0.0742
210 P A -0.5685
211 K A -1.2335
212 I A 0.0000
213 L A -0.3435
214 K A -1.5145
215 T A 0.0000
216 S A 0.0000
217 S A -1.0408
218 L A -0.5371
219 M A 0.0000
220 P A 0.0000
221 K A -1.7684
222 R A -1.4200
223 G A 0.0000
224 Y A 0.0000
225 K A -2.2624
226 L A -1.3362
227 G A 0.0000
228 L A -1.7028
229 E A -2.5161
230 L A -1.6994
231 S A 0.0000
232 E A -2.6102
233 K A -2.3927
234 A A -1.4249
235 C A -0.8616
236 L A 0.0000
237 N A -2.3090
238 G A -2.4974
239 R A -3.2291
240 C A 0.0000
241 R A -2.0579
242 R A -1.6382
243 T A 0.0000
244 V A 0.0000
245 S A 0.0000
246 L A 0.0000
247 E A 0.0000
248 T A 0.0000
249 G A 0.0000
250 C A 0.0000
251 R A 0.0000
252 N A 0.0000
253 V A 0.0000
254 Q A -0.7951
255 L A 0.0000
256 C A 0.0000
257 S A -0.4640
258 T A -0.5663
259 I A 0.0000
260 L A 0.0000
261 N A -1.0129
262 V A -0.2332
263 A A 0.0000
264 F A 0.0000
265 P A -0.4731
266 P A -0.8214
267 E A -1.1582
268 V A 0.5457
269 I A 0.0000
270 G A 0.0514
271 P A 0.4410
272 L A 0.0000
273 F A 0.1715
274 F A 0.0000
275 F A 0.0000
276 P A 0.0000
277 L A -0.0089
278 L A 0.0000
279 Y A 0.0000
280 M A -0.5630
281 E A -1.4850
282 Q A -1.5086
283 Q A 0.0000
284 L A -1.6346
285 K A -3.1528
286 E A -2.8275
287 G A 0.0000
288 E A -3.8336
289 E A -3.9263
290 I A -2.8595
291 V A 0.0000
292 K A -4.6317
293 K A -4.3504
294 I A -3.9640
295 K A -4.7574
296 E A -5.3521
297 E A -5.1955
298 E A -4.9237
299 K A -5.2641
300 K A -5.1286
301 K A -4.6848
302 E A -4.0359
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Laboratory of Theory of Biopolymers 2018