Project name: IL1B

Status: done

Started: 2024-12-27 08:55:22
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Chain sequence(s) A: VRSLNCGLRDSQQKSLVMSGPYELKALHLQGQDMEQQVVFSMSFVQGEESNDKIPVALGLKEKNLYLSCVLKDDKPTLQLESVDPKNYPKKKMEKRFVFNKIEINKLEFESAQFPNWYISTSQAENMPVFLGGTKGGQDITDFTMQFVSS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:28)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:29)
Show buried residues

Minimal score value
-3.7838
Maximal score value
2.1757
Average score
-1.016
Total score value
-152.4004

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 V A -0.0374
4 R A -0.9927
5 S A -0.5681
6 L A -0.3119
7 N A -0.0639
8 C A 0.0000
9 G A 0.0000
10 L A 0.0000
11 R A -0.8777
12 D A 0.0000
13 S A -1.1305
14 Q A -1.4941
15 Q A -1.8018
16 K A 0.0000
17 S A 0.0000
18 L A 0.0000
19 V A -0.5122
20 M A -0.0505
21 S A -0.4380
22 G A -0.2878
23 P A -0.1196
24 Y A 0.4796
25 E A -0.5524
26 L A 0.0000
27 K A -0.7921
28 A A 0.0000
29 L A 0.0000
30 H A -2.0492
31 L A 0.0000
32 Q A -2.6208
33 G A -2.0061
34 Q A -2.3433
35 D A -2.3236
36 M A -1.5928
37 E A -2.6644
38 Q A -1.9099
39 Q A -0.6854
40 V A -0.1211
41 V A 0.0772
42 F A 0.0000
43 S A -0.8519
44 M A 0.0000
45 S A 0.0000
46 F A -0.4041
47 V A -1.6615
48 Q A -2.6255
49 G A -2.7116
50 E A -3.3841
51 E A -3.7838
52 S A -2.9483
53 N A -3.1754
54 D A -3.1903
55 K A -2.9675
56 I A -2.0393
57 P A 0.0000
58 V A 0.0000
59 A A 0.0000
60 L A 0.0000
61 G A 0.0000
62 L A 0.0000
63 K A -2.4636
64 E A -3.1354
65 K A -2.7640
66 N A -2.5812
67 L A 0.0000
68 Y A 0.0000
69 L A 0.0000
70 S A 0.0000
71 C A 0.0000
72 V A -0.3197
73 L A -0.5376
74 K A -2.5298
75 D A -3.4386
76 D A -3.4354
77 K A -2.9878
78 P A -1.1067
79 T A -0.5972
80 L A -0.1229
81 Q A -0.1947
82 L A 0.0000
83 E A -0.3619
84 S A -0.7292
85 V A -1.1969
86 D A -1.8643
87 P A -2.4641
88 K A -2.8403
89 N A -2.8058
90 Y A -2.0245
91 P A -1.7031
92 K A -2.2887
93 K A -2.6673
94 K A -2.8953
95 M A -2.3242
96 E A -2.2651
97 K A -2.5169
98 R A -1.4328
99 F A 0.0000
100 V A 0.0000
101 F A 0.0000
102 N A -1.4080
103 K A -1.0290
104 I A -1.3640
105 E A -2.1656
106 I A -0.0506
108 N A -1.3642
109 K A -1.3591
110 L A 0.0000
111 E A 0.0000
112 F A 0.0000
113 E A -0.7045
114 S A 0.0000
115 A A -1.3284
116 Q A -1.3788
117 F A -0.5319
118 P A -0.9475
119 N A -1.7259
120 W A -1.0996
121 Y A 0.0000
122 I A 0.0000
123 S A 0.0000
124 T A 0.0000
125 S A -1.1837
126 Q A -1.6820
127 A A -1.2841
128 E A -1.8008
129 N A -1.7003
130 M A -0.6871
131 P A -0.5070
132 V A 0.0000
133 F A 0.2147
134 L A 0.0000
135 G A -0.9099
136 G A -1.4984
137 T A -1.7849
138 K A -2.6544
139 G A -1.9418
140 G A -1.7981
141 Q A -2.2086
142 D A -1.9151
143 I A 0.0000
144 T A 0.0000
145 D A -1.2126
146 F A 0.0000
147 T A -0.7274
148 M A 0.4303
149 Q A 0.9557
150 F A 2.1757
151 V A 1.2271
152 S A 0.5996
153 S A 0.0786
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Laboratory of Theory of Biopolymers 2018