Project name: Mb5-11_VVLVFF

Status: done

Started: 2026-07-06 06:28:14
Settings
Chain sequence(s) A: MQANSGSLEVVEASPTSLQVSWDAFHRYHNGFTHPVRYYRVTYGETGGNSPVQEFTVPGSKSTATLSGLKPGVDYTVTVYAVTWYPRYGYGESGPFSFNYRTELDKPSQ
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:58)
Show buried residues

Minimal score value
-2.8112
Maximal score value
1.4917
Average score
-0.7401
Total score value
-80.6664

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 M A 0.3760
2 Q A -0.9865
3 A A -1.0492
4 N A -1.8773
5 S A -1.2012
6 G A 0.0000
7 S A -1.1598
8 L A -0.8862
9 E A -1.8520
10 V A -0.7111
11 V A -0.2042
12 E A -1.5554
13 A A -1.3593
14 S A -1.6435
15 P A -2.0088
16 T A -1.2775
17 S A -1.2294
18 L A 0.0000
19 Q A -0.9558
20 V A 0.0000
21 S A -1.0755
22 W A 0.0000
23 D A -2.0987
24 A A -1.3993
25 F A 0.0000
26 H A -1.1340
27 R A 0.0000
28 Y A 0.9256
29 H A 0.2329
30 N A -0.5866
31 G A 0.1290
32 F A 1.4917
33 T A 0.7490
34 H A 0.0364
35 P A -0.4409
36 V A -1.0238
37 R A -1.5688
38 Y A -0.8638
39 Y A 0.0000
40 R A -0.7844
41 V A 0.0000
42 T A 0.0000
43 Y A 0.0000
44 G A -0.6936
45 E A -1.4173
46 T A -1.1248
47 G A -1.1711
48 G A -1.3190
49 N A -1.5236
50 S A -0.9124
51 P A -0.4131
52 V A 0.2812
53 Q A -1.1658
54 E A -1.7763
55 F A -0.6381
56 T A -0.1398
57 V A -0.4162
58 P A -0.9593
59 G A -1.2558
60 S A -1.2706
61 K A -1.9401
62 S A -1.1594
63 T A -0.8460
64 A A 0.0000
65 T A -0.3906
66 L A 0.0000
67 S A -0.7773
68 G A -0.9976
69 L A 0.0000
70 K A -2.4679
71 P A -2.1069
72 G A -1.3471
73 V A -1.2075
74 D A -2.1002
75 Y A 0.0000
76 T A -0.7693
77 V A 0.0000
78 T A -0.4553
79 V A 0.0000
80 Y A -0.2541
81 A A 0.0000
82 V A 0.0000
83 T A 0.0000
84 W A 0.5026
85 Y A 0.0000
86 P A -0.4625
87 R A -1.1077
88 Y A 0.7095
89 G A 0.7184
90 Y A 1.1251
91 G A 0.3654
92 E A -0.5722
93 S A 0.0000
94 G A -0.6067
95 P A -0.4373
96 F A 0.0009
97 S A -0.4574
98 F A -0.5727
99 N A -1.6789
100 Y A -1.5065
101 R A -2.5311
102 T A 0.0000
103 E A -2.5109
104 L A -1.2861
105 D A -2.7283
106 K A -2.8112
107 P A -1.7877
108 S A -1.6429
109 Q A -1.6609
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Laboratory of Theory of Biopolymers 2018