| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYYSHMLWYRQAPGKEREWVAAIKSLGAKTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCTVGVGTNYYGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:19)
[INFO] Main: Simulation completed successfully. (00:01:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4351 | |
| 2 | V | A | -0.7500 | |
| 3 | Q | A | -0.8400 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.0896 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5825 | |
| 8 | G | A | -1.0333 | |
| 9 | G | A | -0.8592 | |
| 10 | G | A | -0.1144 | |
| 11 | L | A | 0.9242 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3042 | |
| 14 | A | A | -1.4015 | |
| 15 | G | A | -1.3080 | |
| 16 | G | A | -0.8929 | |
| 17 | S | A | -1.2968 | |
| 18 | L | A | -1.0311 | |
| 19 | R | A | -2.2720 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4271 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0895 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6771 | |
| 26 | G | A | -0.9817 | |
| 27 | F | A | -0.1035 | |
| 28 | P | A | -0.1523 | |
| 29 | V | A | 0.0000 | |
| 30 | Y | A | 0.9165 | |
| 31 | Y | A | 1.7883 | |
| 32 | S | A | 0.0000 | |
| 33 | H | A | -0.0143 | |
| 34 | M | A | 0.0000 | |
| 35 | L | A | 0.0041 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3034 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.1348 | |
| 40 | A | A | -2.0886 | |
| 41 | P | A | -1.4654 | |
| 42 | G | A | -1.9877 | |
| 43 | K | A | -3.3955 | |
| 44 | E | A | -3.6106 | |
| 45 | R | A | -2.8595 | |
| 46 | E | A | -1.8416 | |
| 47 | W | A | -0.5590 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | K | A | -1.1564 | |
| 53 | S | A | 0.3300 | |
| 54 | L | A | 1.2291 | |
| 55 | G | A | -0.3770 | |
| 56 | A | A | -0.7395 | |
| 57 | K | A | -1.7990 | |
| 58 | T | A | -0.8868 | |
| 59 | W | A | -0.2774 | |
| 60 | Y | A | -0.5299 | |
| 61 | A | A | -1.1913 | |
| 62 | D | A | -2.3318 | |
| 63 | S | A | -1.7317 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5200 | |
| 66 | G | A | -1.7536 | |
| 67 | R | A | -1.4735 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8851 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.6160 | |
| 72 | R | A | -0.9422 | |
| 73 | D | A | -1.8862 | |
| 74 | N | A | -1.8279 | |
| 75 | A | A | -1.6624 | |
| 76 | K | A | -2.4754 | |
| 77 | N | A | -1.7382 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7597 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.5770 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4142 | |
| 85 | S | A | -1.1400 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.1748 | |
| 88 | P | A | -1.8909 | |
| 89 | E | A | -2.2976 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9813 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.6795 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.0527 | |
| 96 | C | A | 0.0000 | |
| 97 | T | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | G | A | -0.0411 | |
| 100 | V | A | 1.2756 | |
| 101 | G | A | 0.0340 | |
| 102 | T | A | -0.2154 | |
| 103 | N | A | -0.6922 | |
| 104 | Y | A | 0.1121 | |
| 105 | Y | A | 0.1399 | |
| 106 | G | A | -0.0921 | |
| 107 | Q | A | -0.9115 | |
| 108 | G | A | -0.5022 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.2160 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3593 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.7819 |