Project name: query_structure

Status: done

Started: 2026-03-17 00:51:50
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVYYSHMLWYRQAPGKEREWVAAIKSLGAKTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCTVGVGTNYYGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:20)
Show buried residues

Minimal score value
-3.6106
Maximal score value
1.7883
Average score
-0.6715
Total score value
-76.5499

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4351
2 V A -0.7500
3 Q A -0.8400
4 L A 0.0000
5 V A 1.0896
6 E A 0.0000
7 S A -0.5825
8 G A -1.0333
9 G A -0.8592
10 G A -0.1144
11 L A 0.9242
12 V A 0.0000
13 Q A -1.3042
14 A A -1.4015
15 G A -1.3080
16 G A -0.8929
17 S A -1.2968
18 L A -1.0311
19 R A -2.2720
20 L A 0.0000
21 S A -0.4271
22 C A 0.0000
23 A A -0.0895
24 A A 0.0000
25 S A -0.6771
26 G A -0.9817
27 F A -0.1035
28 P A -0.1523
29 V A 0.0000
30 Y A 0.9165
31 Y A 1.7883
32 S A 0.0000
33 H A -0.0143
34 M A 0.0000
35 L A 0.0041
36 W A 0.0000
37 Y A -0.3034
38 R A 0.0000
39 Q A -2.1348
40 A A -2.0886
41 P A -1.4654
42 G A -1.9877
43 K A -3.3955
44 E A -3.6106
45 R A -2.8595
46 E A -1.8416
47 W A -0.5590
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 K A -1.1564
53 S A 0.3300
54 L A 1.2291
55 G A -0.3770
56 A A -0.7395
57 K A -1.7990
58 T A -0.8868
59 W A -0.2774
60 Y A -0.5299
61 A A -1.1913
62 D A -2.3318
63 S A -1.7317
64 V A 0.0000
65 K A -2.5200
66 G A -1.7536
67 R A -1.4735
68 F A 0.0000
69 T A -0.8851
70 I A 0.0000
71 S A -0.6160
72 R A -0.9422
73 D A -1.8862
74 N A -1.8279
75 A A -1.6624
76 K A -2.4754
77 N A -1.7382
78 T A 0.0000
79 V A 0.0000
80 Y A -0.7597
81 L A 0.0000
82 Q A -1.5770
83 M A 0.0000
84 N A -1.4142
85 S A -1.1400
86 L A 0.0000
87 K A -2.1748
88 P A -1.8909
89 E A -2.2976
90 D A 0.0000
91 T A -0.9813
92 A A 0.0000
93 V A -0.6795
94 Y A 0.0000
95 Y A -0.0527
96 C A 0.0000
97 T A 0.0000
98 V A 0.0000
99 G A -0.0411
100 V A 1.2756
101 G A 0.0340
102 T A -0.2154
103 N A -0.6922
104 Y A 0.1121
105 Y A 0.1399
106 G A -0.0921
107 Q A -0.9115
108 G A -0.5022
109 T A 0.0000
110 Q A -1.2160
111 V A 0.0000
112 T A -0.3593
113 V A 0.0000
114 S A -0.7819
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Laboratory of Theory of Biopolymers 2018