| Chain sequence(s) |
H: QVQLQQSGAELARPGASVKMSCKASGYTFTSYTIHWVKQRPGQGLEWIGYINPSSGYTNYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARNPHAMDYWGQGTSVTVSS
L: NIMMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPYTFGGGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:00)
[INFO] Main: Simulation completed successfully. (00:02:02)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4159 | |
| 2 | V | H | -0.8349 | |
| 3 | Q | H | -1.6627 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.0759 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -1.0660 | |
| 8 | G | H | -0.9939 | |
| 9 | A | H | -0.2615 | |
| 11 | E | H | -0.4105 | |
| 12 | L | H | 0.7120 | |
| 13 | A | H | -0.5113 | |
| 14 | R | H | -1.8492 | |
| 15 | P | H | -1.3955 | |
| 16 | G | H | -1.1542 | |
| 17 | A | H | -0.9747 | |
| 18 | S | H | -1.0570 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.4303 | |
| 21 | M | H | 0.0000 | |
| 22 | S | H | -0.7136 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.4632 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.1186 | |
| 27 | G | H | -0.9756 | |
| 28 | Y | H | -0.3581 | |
| 29 | T | H | -0.0779 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -0.6269 | |
| 36 | S | H | -0.1306 | |
| 37 | Y | H | 0.1471 | |
| 38 | T | H | 0.0599 | |
| 39 | I | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | -0.5933 | |
| 44 | Q | H | -0.9927 | |
| 45 | R | H | -1.6252 | |
| 46 | P | H | -1.1105 | |
| 47 | G | H | -1.3754 | |
| 48 | Q | H | -1.9785 | |
| 49 | G | H | -1.3672 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.0149 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | Y | H | 0.1871 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.1424 | |
| 58 | P | H | 0.0000 | |
| 59 | S | H | -0.6508 | |
| 62 | S | H | -0.3630 | |
| 63 | G | H | -0.3482 | |
| 64 | Y | H | 0.7308 | |
| 65 | T | H | 0.2682 | |
| 66 | N | H | -0.2091 | |
| 67 | Y | H | -1.0480 | |
| 68 | N | H | 0.0000 | |
| 69 | Q | H | -2.7983 | |
| 70 | K | H | -2.9864 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.0979 | |
| 74 | D | H | -3.0138 | |
| 75 | K | H | -2.0826 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.9166 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.3751 | |
| 80 | A | H | -0.8085 | |
| 81 | D | H | -1.5514 | |
| 82 | K | H | -2.1946 | |
| 83 | S | H | -1.2530 | |
| 84 | S | H | -0.9980 | |
| 85 | S | H | -1.1361 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3221 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.0463 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.0452 | |
| 93 | S | H | -1.0231 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2671 | |
| 96 | S | H | -1.3733 | |
| 97 | E | H | -2.0205 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.7087 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.0407 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | N | H | 0.0000 | |
| 108 | P | H | -0.3926 | |
| 109 | H | H | -0.5421 | |
| 114 | A | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | -0.2069 | |
| 117 | Y | H | 0.0253 | |
| 118 | W | H | -0.4122 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.7738 | |
| 121 | G | H | -0.8264 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.2518 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1567 | |
| 126 | V | H | -0.6845 | |
| 127 | S | H | -0.5807 | |
| 128 | S | H | -0.8153 | |
| 1 | N | L | -1.2304 | |
| 2 | I | L | 0.0000 | |
| 3 | M | L | 0.0160 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.7705 | |
| 6 | Q | L | -0.8143 | |
| 7 | S | L | -0.8452 | |
| 8 | P | L | -0.5351 | |
| 9 | S | L | -0.7667 | |
| 10 | S | L | -0.8235 | |
| 11 | L | L | -0.3270 | |
| 12 | S | L | -0.5276 | |
| 13 | A | L | 0.0000 | |
| 14 | S | L | -0.5091 | |
| 15 | L | L | 0.1766 | |
| 16 | G | L | -1.0127 | |
| 17 | E | L | -1.6911 | |
| 18 | R | L | -2.2880 | |
| 19 | V | L | 0.0000 | |
| 20 | S | L | -0.6288 | |
| 21 | L | L | 0.0000 | |
| 22 | T | L | -0.8896 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.5339 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.5094 | |
| 27 | Q | L | -2.4698 | |
| 28 | E | L | -2.6586 | |
| 29 | I | L | 0.0000 | |
| 36 | S | L | -0.6605 | |
| 37 | G | L | -0.0433 | |
| 38 | Y | L | 0.9118 | |
| 39 | L | L | 0.0000 | |
| 40 | S | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | L | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6422 | |
| 46 | P | L | -1.4341 | |
| 47 | D | L | -2.2667 | |
| 48 | G | L | -1.5562 | |
| 49 | T | L | -1.3692 | |
| 50 | I | L | 0.0000 | |
| 51 | K | L | -0.9677 | |
| 52 | R | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.2601 | |
| 56 | A | L | 0.3657 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.2426 | |
| 66 | T | L | -0.0107 | |
| 67 | L | L | -0.2209 | |
| 68 | D | L | -0.4378 | |
| 69 | S | L | -0.5101 | |
| 70 | G | L | -0.8282 | |
| 71 | V | L | 0.0000 | |
| 72 | P | L | -1.1494 | |
| 74 | K | L | -1.9435 | |
| 75 | R | L | -1.6146 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6386 | |
| 78 | G | L | -0.4429 | |
| 79 | S | L | -0.9360 | |
| 80 | R | L | -1.7017 | |
| 83 | S | L | -1.3102 | |
| 84 | G | L | -1.4146 | |
| 85 | S | L | -1.9772 | |
| 86 | D | L | -1.7139 | |
| 87 | Y | L | 0.0000 | |
| 88 | S | L | -0.8666 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6447 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.6311 | |
| 93 | S | L | -1.5673 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -1.6802 | |
| 96 | S | L | -1.0537 | |
| 97 | E | L | -2.0487 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.6736 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.2440 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | L | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.5559 | |
| 108 | A | L | 0.1320 | |
| 109 | S | L | -0.1467 | |
| 114 | Y | L | 0.2048 | |
| 115 | P | L | -0.3670 | |
| 116 | Y | L | 0.2755 | |
| 117 | T | L | 0.0953 | |
| 118 | F | L | 0.0980 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.8658 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.6066 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.6886 | |
| 126 | L | L | 0.5961 | |
| 127 | K | L | -0.9581 |