Project name: 2510-5.pdb

Status: done

Started: 2026-03-11 09:49:31
Settings
Chain sequence(s) H: QVQLQQSGAELARPGASVKMSCKASGYTFTSYTIHWVKQRPGQGLEWIGYINPSSGYTNYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARNPHAMDYWGQGTSVTVSS
L: NIMMTQSPSSLSASLGERVSLTCRASQEISGYLSWLQQKPDGTIKRLIYAASTLDSGVPKRFSGSRSGSDYSLTISSLESEDFADYYCLQYASYPYTFGGGTKLELK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:00)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:02)
Show buried residues

Minimal score value
-3.0979
Maximal score value
0.9118
Average score
-0.6017
Total score value
-134.1681

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4159
2 V H -0.8349
3 Q H -1.6627
4 L H 0.0000
5 Q H -2.0759
6 Q H 0.0000
7 S H -1.0660
8 G H -0.9939
9 A H -0.2615
11 E H -0.4105
12 L H 0.7120
13 A H -0.5113
14 R H -1.8492
15 P H -1.3955
16 G H -1.1542
17 A H -0.9747
18 S H -1.0570
19 V H 0.0000
20 K H -1.4303
21 M H 0.0000
22 S H -0.7136
23 C H 0.0000
24 K H -1.4632
25 A H 0.0000
26 S H -1.1186
27 G H -0.9756
28 Y H -0.3581
29 T H -0.0779
30 F H 0.0000
35 T H -0.6269
36 S H -0.1306
37 Y H 0.1471
38 T H 0.0599
39 I H 0.0000
40 H H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H -0.5933
44 Q H -0.9927
45 R H -1.6252
46 P H -1.1105
47 G H -1.3754
48 Q H -1.9785
49 G H -1.3672
50 L H 0.0000
51 E H -1.0149
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 Y H 0.1871
56 I H 0.0000
57 N H -0.1424
58 P H 0.0000
59 S H -0.6508
62 S H -0.3630
63 G H -0.3482
64 Y H 0.7308
65 T H 0.2682
66 N H -0.2091
67 Y H -1.0480
68 N H 0.0000
69 Q H -2.7983
70 K H -2.9864
71 F H 0.0000
72 K H -3.0979
74 D H -3.0138
75 K H -2.0826
76 A H 0.0000
77 T H -0.9166
78 L H 0.0000
79 T H -0.3751
80 A H -0.8085
81 D H -1.5514
82 K H -2.1946
83 S H -1.2530
84 S H -0.9980
85 S H -1.1361
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3221
89 M H 0.0000
90 Q H -1.0463
91 L H 0.0000
92 S H -1.0452
93 S H -1.0231
94 L H 0.0000
95 T H -1.2671
96 S H -1.3733
97 E H -2.0205
98 D H 0.0000
99 S H -0.7087
100 A H 0.0000
101 V H -0.0407
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 N H 0.0000
108 P H -0.3926
109 H H -0.5421
114 A H 0.0000
115 M H 0.0000
116 D H -0.2069
117 Y H 0.0253
118 W H -0.4122
119 G H 0.0000
120 Q H -1.7738
121 G H -0.8264
122 T H 0.0000
123 S H -0.2518
124 V H 0.0000
125 T H -0.1567
126 V H -0.6845
127 S H -0.5807
128 S H -0.8153
1 N L -1.2304
2 I L 0.0000
3 M L 0.0160
4 M L 0.0000
5 T L -0.7705
6 Q L -0.8143
7 S L -0.8452
8 P L -0.5351
9 S L -0.7667
10 S L -0.8235
11 L L -0.3270
12 S L -0.5276
13 A L 0.0000
14 S L -0.5091
15 L L 0.1766
16 G L -1.0127
17 E L -1.6911
18 R L -2.2880
19 V L 0.0000
20 S L -0.6288
21 L L 0.0000
22 T L -0.8896
23 C L 0.0000
24 R L -2.5339
25 A L 0.0000
26 S L -1.5094
27 Q L -2.4698
28 E L -2.6586
29 I L 0.0000
36 S L -0.6605
37 G L -0.0433
38 Y L 0.9118
39 L L 0.0000
40 S L 0.0000
41 W L 0.0000
42 L L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.6422
46 P L -1.4341
47 D L -2.2667
48 G L -1.5562
49 T L -1.3692
50 I L 0.0000
51 K L -0.9677
52 R L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2601
56 A L 0.3657
57 A L 0.0000
65 S L -0.2426
66 T L -0.0107
67 L L -0.2209
68 D L -0.4378
69 S L -0.5101
70 G L -0.8282
71 V L 0.0000
72 P L -1.1494
74 K L -1.9435
75 R L -1.6146
76 F L 0.0000
77 S L -0.6386
78 G L -0.4429
79 S L -0.9360
80 R L -1.7017
83 S L -1.3102
84 G L -1.4146
85 S L -1.9772
86 D L -1.7139
87 Y L 0.0000
88 S L -0.8666
89 L L 0.0000
90 T L -0.6447
91 I L 0.0000
92 S L -1.6311
93 S L -1.5673
94 L L 0.0000
95 E L -1.6802
96 S L -1.0537
97 E L -2.0487
98 D L 0.0000
99 F L -0.6736
100 A L 0.0000
101 D L -1.2440
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 L L 0.0000
106 Q L 0.0000
107 Y L 0.5559
108 A L 0.1320
109 S L -0.1467
114 Y L 0.2048
115 P L -0.3670
116 Y L 0.2755
117 T L 0.0953
118 F L 0.0980
119 G L 0.0000
120 G L -0.8658
121 G L 0.0000
122 T L 0.0000
123 K L -1.6066
124 L L 0.0000
125 E L -0.6886
126 L L 0.5961
127 K L -0.9581
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Laboratory of Theory of Biopolymers 2018