Project name: b64d5a26ed12d08

Status: done

Started: 2025-06-03 05:20:05
Settings
Chain sequence(s) H: EVQLVQSGAEVKKPGASVKVSCKASGYKFSSYWIEWVKQAPGQGLEWIGEILPGSDTTNYNEKFKDRATFTSDTSINTAYMELSRLRSDDTAVYYCARDRGNYRAWFGYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQDISNYLNWYQQKPGGAVKFLIYYTSRLHSGVPSRFSGSGSGTDYTLTISSLQPEDFATYFCQQGEALPWTFGGGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:16)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:17)
Show buried residues

Minimal score value
-3.7142
Maximal score value
1.0265
Average score
-0.6511
Total score value
-147.7892

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -2.1405
2 V H -1.4605
3 Q H -1.4220
4 L H 0.0000
5 V H 0.7542
6 Q H 0.0000
7 S H -0.3231
8 G H -0.4296
9 A H 0.1832
11 E H 0.0832
12 V H 0.9607
13 K H -0.9092
14 K H -2.2662
15 P H -2.3830
16 G H -2.1207
17 A H -1.6430
18 S H -1.5438
19 V H 0.0000
20 K H -1.4006
21 V H 0.0000
22 S H -0.3220
23 C H 0.0000
24 K H -0.4614
25 A H 0.0000
26 S H -1.1038
27 G H -1.5873
28 Y H -1.2509
29 K H -1.7295
30 F H 0.0000
35 S H -0.9253
36 S H -0.6163
37 Y H -0.1923
38 W H -0.0197
39 I H 0.0000
40 E H 0.0000
41 W H 0.0000
42 V H 0.0000
43 K H 0.0000
44 Q H -0.5265
45 A H -0.9360
46 P H -1.0322
47 G H -1.2610
48 Q H -1.7637
49 G H -1.1771
50 L H 0.0000
51 E H -0.9676
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 E H 0.0000
56 I H 0.0000
57 L H -0.2984
58 P H 0.0000
59 G H -0.9056
62 S H -0.9636
63 D H -1.4067
64 T H -0.7799
65 T H -0.5087
66 N H -0.8551
67 Y H -1.5046
68 N H -2.2775
69 E H -3.6680
70 K H -3.4183
71 F H 0.0000
72 K H -3.7142
74 D H -3.3874
75 R H 0.0000
76 A H 0.0000
77 T H -0.8958
78 F H 0.0000
79 T H -0.4245
80 S H -0.5708
81 D H -0.4379
82 T H -0.3819
83 S H 0.2597
84 I H 1.0265
85 N H -0.4493
86 T H 0.0000
87 A H 0.0000
88 Y H -0.4529
89 M H 0.0000
90 E H -1.1454
91 L H 0.0000
92 S H -1.7225
93 R H -2.6194
94 L H 0.0000
95 R H -2.9245
96 S H -2.1140
97 D H -2.2858
98 D H 0.0000
99 T H -0.6840
100 A H 0.0000
101 V H 0.4725
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 D H 0.0000
108 R H -0.9450
109 G H -0.7832
110 N H -0.7904
111 Y H 0.4099
112 R H -0.1769
113 A H 0.0000
114 W H 0.0000
115 F H 0.0000
116 G H -0.5329
117 Y H -0.2594
118 W H -0.2360
119 G H 0.0000
120 Q H -0.9126
121 G H -0.1598
122 T H 0.0000
123 L H 0.7234
124 V H 0.0000
125 T H -0.0922
126 V H 0.0000
127 S H -0.9181
128 S H -0.8411
1 D L -2.2165
2 I L 0.0000
3 Q L -2.2560
4 M L 0.0000
5 T L -1.4015
6 Q L -1.0577
7 S L -0.7159
8 P L -0.6856
9 S L -0.9347
10 S L -1.3701
11 L L -0.9314
12 S L -1.1316
13 A L 0.0000
14 S L -0.3222
15 V L 0.6231
16 G L -0.5057
17 D L -1.4906
18 R L -2.1542
19 V L 0.0000
20 T L -0.5665
21 I L 0.0000
22 T L -0.8336
23 C L 0.0000
24 R L -2.9740
25 A L 0.0000
26 S L -2.2464
27 Q L -2.7374
28 D L -2.8825
29 I L 0.0000
36 S L -1.0151
37 N L -0.7673
38 Y L -0.2739
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.1384
45 K L -1.5374
46 P L -0.8261
47 G L -0.9752
48 G L -1.1287
49 A L -1.0253
50 V L 0.0000
51 K L -1.4760
52 F L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.2198
56 Y L -0.0312
57 T L 0.0000
65 S L -0.7276
66 R L -1.2412
67 L L -0.3569
68 H L -0.7033
69 S L -0.5165
70 G L -0.4848
71 V L -0.3166
72 P L -0.3008
74 S L -0.3957
75 R L -0.8057
76 F L 0.0000
77 S L -0.5178
78 G L -0.4342
79 S L -0.6996
80 G L -0.9961
83 S L -1.2589
84 G L -1.7306
85 T L -2.2942
86 D L -2.3374
87 Y L 0.0000
88 T L -0.7018
89 L L 0.0000
90 T L -0.6105
91 I L 0.0000
92 S L -1.3841
93 S L -1.0857
94 L L 0.0000
95 Q L -0.5356
96 P L -0.5525
97 E L -1.7262
98 D L 0.0000
99 F L -0.8659
100 A L 0.0000
101 T L 0.0000
102 Y L 0.0000
103 F L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L 0.0000
108 E L -0.5986
109 A L -0.0374
114 L L 0.3336
115 P L -0.5412
116 W L 0.0000
117 T L -0.6799
118 F L 0.0000
119 G L 0.0000
120 G L -1.1404
121 G L -1.0531
122 T L 0.0000
123 K L -2.3501
124 V L 0.0000
125 E L -1.7543
126 I L 0.3780
127 K L -1.0744
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Laboratory of Theory of Biopolymers 2018