| Chain sequence(s) |
A: GKGHKGHG
C: GKGHKGHG B: GKGHKGHG D: GKGHKGHG input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:35)
[INFO] Main: Simulation completed successfully. (00:04:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.5792 | |
| 2 | K | A | -3.9991 | |
| 3 | G | A | -3.5032 | |
| 4 | H | A | -4.4975 | |
| 5 | K | A | -4.4152 | |
| 6 | G | A | -3.4260 | |
| 7 | H | A | -3.5359 | |
| 8 | G | A | -2.4046 | |
| 1 | G | B | -2.8627 | |
| 2 | K | B | -4.1588 | |
| 3 | G | B | -3.7137 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | -4.8448 | |
| 6 | G | B | -3.7414 | |
| 7 | H | B | -3.2969 | |
| 8 | G | B | -2.1026 | |
| 1 | G | C | -2.5907 | |
| 2 | K | C | -3.6183 | |
| 3 | G | C | -2.9744 | |
| 4 | H | C | -4.4548 | |
| 5 | K | C | -3.5723 | |
| 6 | G | C | -3.0557 | |
| 7 | H | C | -3.1046 | |
| 8 | G | C | -1.9401 | |
| 1 | G | D | -2.2875 | |
| 2 | K | D | -3.1516 | |
| 3 | G | D | -2.8339 | |
| 4 | H | D | -3.7054 | |
| 5 | K | D | -3.8810 | |
| 6 | G | D | -3.1506 | |
| 7 | H | D | -3.4249 | |
| 8 | G | D | -2.0921 |