Project name: GKGHKGHG4

Status: done

Started: 2026-05-21 12:45:06
Settings
Chain sequence(s) A: GKGHKGHG
C: GKGHKGHG
B: GKGHKGHG
D: GKGHKGHG
input PDB
Selected Chain(s) A,C,B,D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:36)
Show buried residues

Minimal score value
-4.8448
Maximal score value
0.0
Average score
-3.2162
Total score value
-102.9195

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.5792
2 K A -3.9991
3 G A -3.5032
4 H A -4.4975
5 K A -4.4152
6 G A -3.4260
7 H A -3.5359
8 G A -2.4046
1 G B -2.8627
2 K B -4.1588
3 G B -3.7137
4 H B 0.0000
5 K B -4.8448
6 G B -3.7414
7 H B -3.2969
8 G B -2.1026
1 G C -2.5907
2 K C -3.6183
3 G C -2.9744
4 H C -4.4548
5 K C -3.5723
6 G C -3.0557
7 H C -3.1046
8 G C -1.9401
1 G D -2.2875
2 K D -3.1516
3 G D -2.8339
4 H D -3.7054
5 K D -3.8810
6 G D -3.1506
7 H D -3.4249
8 G D -2.0921
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Laboratory of Theory of Biopolymers 2018