Project name: 275

Status: done

Started: 2026-01-20 06:35:03
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGSVSPGYMHWVRQAPGKGLEWVGLITIYDPKFQDRATISADNSKNTAYLQMNSLRAEDTAVYYCARASVGGGGLVLLTWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT
L: DIQMTQSPSSLSASVGDRVTITCRLTSEPSSGGILSWYQQKPGKAPKVLIYGPNLEKPSGVPSRFSGSGSGTDYTLTISSLQPEDFATYYCAYSKKKLTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:07:59)
[INFO]       Main:     Simulation completed successfully.                                          (00:08:03)
Show buried residues

Minimal score value
-3.591
Maximal score value
1.5907
Average score
-0.7564
Total score value
-331.293

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9569
2 V H -1.1708
3 Q H -1.4890
4 L H 0.0000
5 V H 0.2838
6 E H 0.0000
7 S H -0.4784
8 G H -0.8016
9 G H -0.4453
10 G H -0.3058
11 L H -0.1118
12 V H 0.0000
13 Q H -1.7328
14 P H -1.9347
15 G H -1.5768
16 G H -1.2604
17 S H -1.3714
18 L H -1.1260
19 R H -1.8353
20 L H 0.0000
21 S H -0.4004
22 C H 0.0000
23 A H -0.3643
24 A H -0.6157
25 S H -0.9746
26 G H -1.0206
27 S H -0.8149
28 V H 0.0000
29 S H -0.6628
30 P H 0.0000
31 G H -0.0963
32 Y H 0.9450
33 M H 0.0000
34 H H 0.0000
35 W H 0.0000
36 V H 0.0000
37 R H 0.0000
38 Q H -0.7298
39 A H -1.1648
40 P H -0.9890
41 G H -1.4787
42 K H -2.3234
43 G H -1.5081
44 L H 0.0000
45 E H -0.7094
46 W H 0.0000
47 V H 0.0000
48 G H 0.0000
49 L H 0.0000
50 I H 0.9575
51 T H 0.5428
52 I H 0.6738
53 Y H -0.5113
54 D H 0.0000
55 P H -1.7160
56 K H -2.4615
57 F H 0.0000
58 Q H -2.4536
59 D H -2.8912
60 R H -2.0327
61 A H 0.0000
62 T H -0.7244
63 I H 0.0000
64 S H -0.1498
65 A H -0.8001
66 D H -1.8786
67 N H -2.3771
68 S H -1.9212
69 K H -2.5001
70 N H -1.9206
71 T H -1.1462
72 A H 0.0000
73 Y H -0.4201
74 L H 0.0000
75 Q H -1.0762
76 M H 0.0000
77 N H -1.7263
78 S H -1.5566
79 L H 0.0000
80 R H -2.7780
81 A H -1.9545
82 E H -2.3784
83 D H 0.0000
84 T H -0.8224
85 A H 0.0000
86 V H 0.1217
87 Y H 0.0000
88 Y H 0.0000
89 C H 0.0000
90 A H 0.0000
91 R H -0.1457
92 A H 0.0000
93 S H 0.8647
94 V H 1.5907
95 G H 0.3268
96 G H -0.6428
97 G H -0.7473
98 G H 0.0000
99 L H 0.0592
100 V H 0.0000
101 L H 0.0000
102 L H 0.4422
103 T H -0.5409
104 W H -0.6131
105 G H 0.0000
106 Q H -1.5506
107 G H -0.6823
108 T H -0.1115
109 L H 0.0663
110 V H 0.0000
111 T H -0.5350
112 V H 0.0000
113 S H -1.0500
114 S H -0.7198
115 A H -0.4960
116 S H -0.6339
117 T H -0.8773
118 K H -1.4733
119 G H -1.4580
120 P H 0.0000
121 S H -0.4563
122 V H 0.0000
123 F H 0.0000
124 P H -1.1476
125 L H 0.0000
126 A H -1.2028
127 P H 0.0000
128 S H -1.0981
129 S H -0.9161
130 K H -1.3808
131 S H 0.0000
132 T H -0.8064
133 S H -0.8206
134 G H -0.8368
135 G H -0.8977
136 T H -0.6096
137 A H 0.0000
138 A H 0.0000
139 L H 0.0000
140 G H 0.0000
141 C H 0.0000
142 L H 0.0000
143 V H 0.0000
144 K H 0.0000
145 D H -0.4501
146 Y H 0.0000
147 F H 0.0000
148 P H 0.0000
149 E H -0.7050
150 P H -0.6865
151 V H -0.6891
152 T H -0.5845
153 V H -0.4188
154 S H -0.4205
155 W H 0.0000
156 N H -0.8812
157 S H -0.7293
158 G H -0.5386
159 A H -0.2746
160 L H 0.0013
161 T H -0.1605
162 S H -0.1418
163 G H -0.1314
164 V H 0.1915
165 H H -0.2519
166 T H -0.1424
167 F H 0.0000
168 P H -0.2245
169 A H 0.2671
170 V H 0.5860
171 L H 1.1495
172 Q H 0.2664
173 S H -0.1060
174 S H -0.2239
175 G H 0.0345
176 L H 0.0849
177 Y H 0.4366
178 S H 0.0000
179 L H 0.0000
180 S H 0.0000
181 S H 0.0000
182 V H 0.0000
183 V H 0.0000
184 T H -0.1052
185 V H 0.0000
186 P H -0.5397
187 S H -0.5680
188 S H -0.6120
189 S H 0.0000
190 L H -0.8418
191 G H -1.0314
192 T H -0.8268
193 Q H -1.4003
194 T H -1.2460
195 Y H 0.0000
196 I H -1.3107
197 C H 0.0000
198 N H -1.5324
199 V H 0.0000
200 N H -1.9389
201 H H 0.0000
202 K H -2.7309
203 P H -1.6158
204 S H -1.8817
205 N H -2.5954
206 T H -2.0922
207 K H -2.7266
208 V H -1.7021
209 D H -2.6138
210 K H -2.2647
211 K H -2.5577
212 V H 0.0000
213 E H -2.8497
214 P H -1.8322
215 K H -2.3118
216 S H -1.5886
217 C H -1.2027
218 D H -2.6602
219 K H -2.6966
220 T H -1.6807
221 H H -1.8819
222 T H -1.1973
1 D L -2.2229
2 I L -1.8422
3 Q L -1.9327
4 M L 0.0000
5 T L -1.3254
6 Q L 0.0000
7 S L -0.8327
8 P L -0.5972
9 S L -0.8041
10 S L -0.7807
11 L L -0.6325
12 S L -1.1294
13 A L 0.0000
14 S L -1.0089
15 V L -0.1570
16 G L -0.7581
17 D L -1.8703
18 R L -2.3403
19 V L 0.0000
20 T L -0.6352
21 I L 0.0000
22 T L -0.7394
23 C L 0.0000
24 R L -2.5146
25 L L 0.0000
26 T L -1.5836
27 S L -1.8096
28 E L -2.3234
29 P L -1.4445
30 S L -1.0185
31 S L -0.9317
32 G L -1.2478
33 G L -1.4746
34 I L 0.0000
35 L L 0.0000
36 S L 0.0000
37 W L 0.0000
38 Y L 0.0000
39 Q L 0.0000
40 Q L 0.0000
41 K L -2.0095
42 P L -1.4910
43 G L -1.8094
44 K L -2.6078
45 A L -1.6879
46 P L 0.0000
47 K L -1.2472
48 V L 0.0000
49 L L 0.0000
50 I L 0.0000
51 Y L -0.5257
52 G L 0.0000
53 P L -1.3157
54 N L -1.8914
55 L L -1.3236
56 E L -1.9615
57 K L -1.5843
58 P L -0.7308
59 S L -0.7406
60 G L -0.6444
61 V L -0.5499
62 P L -0.4522
63 S L -0.5570
64 R L -0.7253
65 F L 0.0000
66 S L -0.6050
67 G L -0.6795
68 S L -0.7897
69 G L -1.0593
70 S L -1.2766
71 G L -1.4711
72 T L -1.7566
73 D L -1.8595
74 Y L -0.9538
75 T L -0.5909
76 L L 0.0000
77 T L -0.5707
78 I L 0.0000
79 S L -1.2687
80 S L -1.1494
81 L L 0.0000
82 Q L -1.0020
83 P L -1.5572
84 E L -2.0624
85 D L 0.0000
86 F L 0.0000
87 A L 0.0000
88 T L -0.8371
89 Y L 0.0000
90 Y L 0.0000
91 C L 0.0000
92 A L 0.0000
93 Y L 0.0000
94 S L 0.0000
95 K L -2.3039
96 K L -2.4707
97 K L -1.6600
98 L L 0.0000
99 T L -1.0207
100 F L -0.3883
101 G L 0.0000
102 Q L -1.6344
103 G L 0.0000
104 T L 0.0000
105 K L -1.3578
106 V L 0.0000
107 E L -1.2827
108 I L 0.0000
109 K L -1.7150
110 R L -0.9898
111 T L -0.1557
112 V L 0.2398
113 A L -0.0589
114 A L -0.0958
115 P L 0.0000
116 S L -0.2348
117 V L 0.0000
118 F L 0.0000
119 I L 0.0000
120 F L 0.0000
121 P L -0.6721
122 P L 0.0000
123 S L -1.7719
124 D L -3.0300
125 E L -2.8403
126 Q L 0.0000
127 L L -2.2108
128 K L -2.7829
129 S L -1.7509
130 G L -1.2654
131 T L -0.9850
132 A L 0.0000
133 S L 0.0000
134 V L 0.0000
135 V L 0.0000
136 C L 0.0000
137 L L 0.0000
138 L L 0.0000
139 N L 0.0000
140 N L -0.7783
141 F L 0.0000
142 Y L 0.0000
143 P L -1.8321
144 R L -3.0857
145 E L -3.2677
146 A L -2.3665
147 K L -2.4416
148 V L 0.0000
149 Q L -0.6888
150 W L 0.0000
151 K L -0.4808
152 V L 0.0000
153 D L -1.2982
154 N L -1.2588
155 A L -0.1956
156 L L 0.6012
157 Q L -0.2638
158 S L -0.4589
159 G L -0.8680
160 N L -0.7644
161 S L -0.9937
162 Q L -1.1027
163 E L -1.4140
164 S L -0.7051
165 V L -0.6392
166 T L -0.9934
167 E L -1.9864
168 Q L 0.0000
169 D L -1.9563
170 S L -2.2170
171 K L -2.4987
172 D L -1.6731
173 S L 0.0000
174 T L 0.0000
175 Y L 0.0000
176 S L 0.0000
177 L L 0.0000
178 S L 0.0000
179 S L 0.0000
180 T L -0.5477
181 L L 0.0000
182 T L -0.3744
183 L L -0.6077
184 S L -0.9977
185 K L -1.9672
186 A L -1.8606
187 D L -2.4726
188 Y L 0.0000
189 E L -3.5910
190 K L -3.5147
191 H L -2.7888
192 K L -2.8659
193 V L -1.4492
194 Y L 0.0000
195 A L 0.0000
196 C L 0.0000
197 E L -0.6579
198 V L 0.0000
199 T L -1.2147
200 H L 0.0000
201 Q L -1.7505
202 G L -0.4233
203 L L -0.2247
204 S L -0.4524
205 S L -0.4279
206 P L -0.5485
207 V L -0.0035
208 T L -0.4164
209 K L -0.8024
210 S L -0.7963
211 F L 0.0000
212 N L -1.9177
213 R L -3.0129
214 G L -2.3395
215 E L -2.1995
216 C L -1.0987
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018