| Chain sequence(s) |
A: GSKGHFF
C: GSKGHFF B: GSKGHFF E: GSKGHFF D: GSKGHFF G: GSKGHFF F: GSKGHFF H: GSKGHFF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:14)
[INFO] Main: Simulation completed successfully. (00:04:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.0726 | |
| 2 | S | A | -2.5526 | |
| 3 | K | A | -4.4721 | |
| 4 | G | A | -2.9400 | |
| 5 | H | A | -1.2895 | |
| 6 | F | A | 1.8776 | |
| 7 | F | A | 2.5594 | |
| 1 | G | B | -1.9785 | |
| 2 | S | B | -2.7193 | |
| 3 | K | B | -4.2036 | |
| 4 | G | B | -2.8462 | |
| 5 | H | B | -0.9632 | |
| 6 | F | B | 2.2120 | |
| 7 | F | B | 3.1877 | |
| 1 | G | C | -2.0219 | |
| 2 | S | C | -3.3840 | |
| 3 | K | C | -3.9070 | |
| 4 | G | C | -1.9674 | |
| 5 | H | C | 0.1193 | |
| 6 | F | C | 2.6575 | |
| 7 | F | C | 3.9299 | |
| 1 | G | D | -1.8141 | |
| 2 | S | D | -2.7416 | |
| 3 | K | D | -2.6914 | |
| 4 | G | D | -1.1619 | |
| 5 | H | D | 0.8483 | |
| 6 | F | D | 2.9900 | |
| 7 | F | D | 3.6449 | |
| 1 | G | E | -2.3134 | |
| 2 | S | E | -2.7574 | |
| 3 | K | E | -3.7377 | |
| 4 | G | E | 0.0000 | |
| 5 | H | E | -1.6617 | |
| 6 | F | E | 0.0000 | |
| 7 | F | E | 2.8663 | |
| 1 | G | F | -1.8581 | |
| 2 | S | F | -3.4689 | |
| 3 | K | F | -3.7980 | |
| 4 | G | F | -2.1514 | |
| 5 | H | F | -0.4573 | |
| 6 | F | F | 2.3916 | |
| 7 | F | F | 0.0000 | |
| 1 | G | G | -2.3368 | |
| 2 | S | G | -2.3975 | |
| 3 | K | G | -3.3279 | |
| 4 | G | G | -1.1631 | |
| 5 | H | G | 0.5306 | |
| 6 | F | G | 0.0000 | |
| 7 | F | G | 3.7554 | |
| 1 | G | H | -2.1225 | |
| 2 | S | H | -2.3688 | |
| 3 | K | H | -2.9352 | |
| 4 | G | H | 0.0000 | |
| 5 | H | H | 0.7775 | |
| 6 | F | H | 3.3670 | |
| 7 | F | H | 3.9217 |