Project name: GSKGHFF8

Status: done

Started: 2026-02-20 09:01:44
Settings
Chain sequence(s) A: GSKGHFF
C: GSKGHFF
B: GSKGHFF
E: GSKGHFF
D: GSKGHFF
G: GSKGHFF
F: GSKGHFF
H: GSKGHFF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:04:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:04:15)
Show buried residues

Minimal score value
-4.4721
Maximal score value
3.9299
Average score
-0.7669
Total score value
-42.9459

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -2.0726
2 S A -2.5526
3 K A -4.4721
4 G A -2.9400
5 H A -1.2895
6 F A 1.8776
7 F A 2.5594
1 G B -1.9785
2 S B -2.7193
3 K B -4.2036
4 G B -2.8462
5 H B -0.9632
6 F B 2.2120
7 F B 3.1877
1 G C -2.0219
2 S C -3.3840
3 K C -3.9070
4 G C -1.9674
5 H C 0.1193
6 F C 2.6575
7 F C 3.9299
1 G D -1.8141
2 S D -2.7416
3 K D -2.6914
4 G D -1.1619
5 H D 0.8483
6 F D 2.9900
7 F D 3.6449
1 G E -2.3134
2 S E -2.7574
3 K E -3.7377
4 G E 0.0000
5 H E -1.6617
6 F E 0.0000
7 F E 2.8663
1 G F -1.8581
2 S F -3.4689
3 K F -3.7980
4 G F -2.1514
5 H F -0.4573
6 F F 2.3916
7 F F 0.0000
1 G G -2.3368
2 S G -2.3975
3 K G -3.3279
4 G G -1.1631
5 H G 0.5306
6 F G 0.0000
7 F G 3.7554
1 G H -2.1225
2 S H -2.3688
3 K H -2.9352
4 G H 0.0000
5 H H 0.7775
6 F H 3.3670
7 F H 3.9217
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Laboratory of Theory of Biopolymers 2018