Project name: 1REX [mutate: IT56A] [mutate: FI57A] [mutate: FI57A]

Status: done

Started: 2024-11-21 06:01:18
Settings
Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues FI57A
Energy difference between WT (input) and mutated protein (by FoldX) 3.93611 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:10)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:33)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:34)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:09)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:11)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:35)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:01:11)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:12)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:38)
Show buried residues

Minimal score value
-4.2926
Maximal score value
1.5152
Average score
-1.0581
Total score value
-137.5507

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -2.4314
2 V A -0.2780
3 F A 0.0000
4 E A -2.1320
5 R A -1.8496
6 C A -1.5156
7 E A -1.8770
8 L A 0.0000
9 A A 0.0000
10 R A -2.2489
11 T A -1.7072
12 L A 0.0000
13 K A -2.4047
14 R A -2.5760
15 L A -1.2826
16 G A -1.4418
17 M A 0.0000
18 D A -2.1820
19 G A -1.7600
20 Y A -1.7307
21 R A -2.6511
22 G A -1.6521
23 I A 0.0000
24 S A -1.2864
25 L A 0.0000
26 A A -1.2053
27 N A -1.1539
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.0262
34 W A -0.5198
35 E A -0.2347
36 S A -0.7228
37 G A -0.5976
38 Y A 0.0000
39 N A -1.3195
40 T A 0.0000
41 R A -2.5242
42 A A -1.3710
43 T A -1.0170
44 N A -0.8740
45 Y A -0.2528
46 N A -1.3086
47 A A -1.2590
48 G A -1.6816
49 D A -2.6908
50 R A -2.8839
51 S A 0.0000
52 T A 0.0000
53 D A -0.6766
54 Y A 0.0000
55 G A 0.0000
56 I A 0.0000
57 I A 0.0000 mutated: FI57A
58 Q A 0.0000
59 I A 0.0000
60 N A -0.4689
61 S A 0.0000
62 R A -0.6430
63 Y A 1.0954
64 W A 0.2327
65 C A 0.0000
66 N A -1.0974
67 D A -1.4585
68 G A -1.5939
69 K A -2.1918
70 T A 0.0000
71 P A -1.3235
72 G A -0.2674
73 A A 0.1073
74 V A 1.5152
75 N A 0.1597
76 A A 0.1923
77 C A -0.4312
78 H A -0.8061
79 L A -0.7312
80 S A -0.8197
81 C A 0.0000
82 S A -0.7240
83 A A -1.0283
84 L A 0.0000
85 L A -2.0254
86 Q A -3.1297
87 D A -3.5283
88 N A -2.8904
89 I A 0.0000
90 A A -1.0973
91 D A -1.3479
92 A A 0.0000
93 V A 0.0000
94 A A -0.5534
95 C A 0.0000
96 A A 0.0000
97 K A -1.6039
98 R A -1.7024
99 V A 0.0000
100 V A 0.0000
101 R A -3.0344
102 D A -2.2038
103 P A -1.4625
104 Q A -1.6202
105 G A -2.0652
106 I A 0.0000
107 R A -1.8621
108 A A -0.7082
109 W A 0.0000
110 V A 0.3499
111 A A -0.7067
112 W A -1.5876
113 R A -2.8498
114 N A -2.8100
115 R A -3.1088
116 C A 0.0000
117 Q A -3.2049
118 N A -3.3693
119 R A -4.2926
120 D A -3.8956
121 V A -3.0635
122 R A -3.3789
123 Q A -2.7812
124 Y A 0.0000
125 V A -1.4483
126 Q A -2.1313
127 G A -1.1589
128 C A 0.0000
129 G A -0.4819
130 V A -0.1875
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Laboratory of Theory of Biopolymers 2018