Chain sequence(s) |
A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB |
Selected Chain(s) | A |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | FI57A |
Energy difference between WT (input) and mutated protein (by FoldX) | 3.93611 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:01:09) [INFO] FoldX: Starting FoldX energy minimalization (00:01:10) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:33) [INFO] Main: Simulation completed successfully. (00:01:34) [INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:01:09) [INFO] FoldX: Starting FoldX energy minimalization (00:01:11) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35) [INFO] Main: Simulation completed successfully. (00:01:36) [INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:01:11) [INFO] FoldX: Starting FoldX energy minimalization (00:01:12) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:37) [INFO] Main: Simulation completed successfully. (00:01:38) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | K | A | -2.4314 | |
2 | V | A | -0.2780 | |
3 | F | A | 0.0000 | |
4 | E | A | -2.1320 | |
5 | R | A | -1.8496 | |
6 | C | A | -1.5156 | |
7 | E | A | -1.8770 | |
8 | L | A | 0.0000 | |
9 | A | A | 0.0000 | |
10 | R | A | -2.2489 | |
11 | T | A | -1.7072 | |
12 | L | A | 0.0000 | |
13 | K | A | -2.4047 | |
14 | R | A | -2.5760 | |
15 | L | A | -1.2826 | |
16 | G | A | -1.4418 | |
17 | M | A | 0.0000 | |
18 | D | A | -2.1820 | |
19 | G | A | -1.7600 | |
20 | Y | A | -1.7307 | |
21 | R | A | -2.6511 | |
22 | G | A | -1.6521 | |
23 | I | A | 0.0000 | |
24 | S | A | -1.2864 | |
25 | L | A | 0.0000 | |
26 | A | A | -1.2053 | |
27 | N | A | -1.1539 | |
28 | W | A | 0.0000 | |
29 | M | A | 0.0000 | |
30 | C | A | 0.0000 | |
31 | L | A | 0.0000 | |
32 | A | A | 0.0000 | |
33 | K | A | -1.0262 | |
34 | W | A | -0.5198 | |
35 | E | A | -0.2347 | |
36 | S | A | -0.7228 | |
37 | G | A | -0.5976 | |
38 | Y | A | 0.0000 | |
39 | N | A | -1.3195 | |
40 | T | A | 0.0000 | |
41 | R | A | -2.5242 | |
42 | A | A | -1.3710 | |
43 | T | A | -1.0170 | |
44 | N | A | -0.8740 | |
45 | Y | A | -0.2528 | |
46 | N | A | -1.3086 | |
47 | A | A | -1.2590 | |
48 | G | A | -1.6816 | |
49 | D | A | -2.6908 | |
50 | R | A | -2.8839 | |
51 | S | A | 0.0000 | |
52 | T | A | 0.0000 | |
53 | D | A | -0.6766 | |
54 | Y | A | 0.0000 | |
55 | G | A | 0.0000 | |
56 | I | A | 0.0000 | |
57 | I | A | 0.0000 | mutated: FI57A |
58 | Q | A | 0.0000 | |
59 | I | A | 0.0000 | |
60 | N | A | -0.4689 | |
61 | S | A | 0.0000 | |
62 | R | A | -0.6430 | |
63 | Y | A | 1.0954 | |
64 | W | A | 0.2327 | |
65 | C | A | 0.0000 | |
66 | N | A | -1.0974 | |
67 | D | A | -1.4585 | |
68 | G | A | -1.5939 | |
69 | K | A | -2.1918 | |
70 | T | A | 0.0000 | |
71 | P | A | -1.3235 | |
72 | G | A | -0.2674 | |
73 | A | A | 0.1073 | |
74 | V | A | 1.5152 | |
75 | N | A | 0.1597 | |
76 | A | A | 0.1923 | |
77 | C | A | -0.4312 | |
78 | H | A | -0.8061 | |
79 | L | A | -0.7312 | |
80 | S | A | -0.8197 | |
81 | C | A | 0.0000 | |
82 | S | A | -0.7240 | |
83 | A | A | -1.0283 | |
84 | L | A | 0.0000 | |
85 | L | A | -2.0254 | |
86 | Q | A | -3.1297 | |
87 | D | A | -3.5283 | |
88 | N | A | -2.8904 | |
89 | I | A | 0.0000 | |
90 | A | A | -1.0973 | |
91 | D | A | -1.3479 | |
92 | A | A | 0.0000 | |
93 | V | A | 0.0000 | |
94 | A | A | -0.5534 | |
95 | C | A | 0.0000 | |
96 | A | A | 0.0000 | |
97 | K | A | -1.6039 | |
98 | R | A | -1.7024 | |
99 | V | A | 0.0000 | |
100 | V | A | 0.0000 | |
101 | R | A | -3.0344 | |
102 | D | A | -2.2038 | |
103 | P | A | -1.4625 | |
104 | Q | A | -1.6202 | |
105 | G | A | -2.0652 | |
106 | I | A | 0.0000 | |
107 | R | A | -1.8621 | |
108 | A | A | -0.7082 | |
109 | W | A | 0.0000 | |
110 | V | A | 0.3499 | |
111 | A | A | -0.7067 | |
112 | W | A | -1.5876 | |
113 | R | A | -2.8498 | |
114 | N | A | -2.8100 | |
115 | R | A | -3.1088 | |
116 | C | A | 0.0000 | |
117 | Q | A | -3.2049 | |
118 | N | A | -3.3693 | |
119 | R | A | -4.2926 | |
120 | D | A | -3.8956 | |
121 | V | A | -3.0635 | |
122 | R | A | -3.3789 | |
123 | Q | A | -2.7812 | |
124 | Y | A | 0.0000 | |
125 | V | A | -1.4483 | |
126 | Q | A | -2.1313 | |
127 | G | A | -1.1589 | |
128 | C | A | 0.0000 | |
129 | G | A | -0.4819 | |
130 | V | A | -0.1875 |