Project name: csga-abeta (cluster3)

Status: done

Started: 2026-03-24 06:59:25
Settings
Chain sequence(s) A: SSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQILSLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQWPP
B: LVFFAEDVGSNKGAIIGLMVGGVVIA
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:53)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:53)
Show buried residues

Minimal score value
-3.357
Maximal score value
2.8007
Average score
-0.4944
Total score value
-59.8229

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
3 S A 0.7571
4 S A 0.0000
5 Q A 0.4561
6 I A 0.0000
7 T A 0.0000
8 F A 0.0000
9 N A -1.4077
10 T A -0.8649
11 T A -0.9107
12 Q A -2.1202
13 Q A -2.3913
14 G A -2.2207
15 D A -2.7114
16 M A -1.8206
17 Y A -1.4530
18 T A -1.2909
19 I A 0.0000
20 I A -0.7538
21 P A 0.0000
22 E A -0.3724
23 V A 0.0000
24 T A 0.0000
25 L A 0.0000
26 T A 0.3896
27 Q A -0.9193
28 S A -0.7613
29 C A 0.0974
30 L A 1.1306
31 C A 0.0000
32 R A -1.2683
33 V A 0.0000
34 Q A -2.1152
35 I A 0.0000
36 L A -1.0803
37 S A 0.0000
38 L A -1.2066
39 R A 0.0000
40 E A -2.2424
41 G A -2.0226
42 S A -1.2961
43 S A -1.0488
44 G A -1.3024
45 Q A -2.1251
46 S A -1.4564
47 Q A -1.6944
48 T A -1.4904
49 K A -2.7676
50 Q A -3.0769
51 E A -3.3570
52 K A -2.1051
53 T A -0.8044
54 L A 0.2020
55 S A 0.4053
56 L A 0.0000
57 P A -0.5215
58 A A -0.4685
59 N A 0.4806
60 Q A -0.3091
61 P A 0.2073
62 I A 0.2175
63 A A -0.1771
64 L A -0.2018
65 T A -0.8754
66 K A -1.7495
67 L A 0.0000
68 S A -0.8984
69 L A 0.0000
70 N A -1.9968
71 I A -1.7914
72 S A -1.7440
73 P A -1.7902
74 D A -2.5789
75 D A 0.0000
76 R A -2.7467
77 V A -1.8614
78 K A -0.8340
79 I A 0.0000
80 V A 0.0158
81 V A 0.0000
82 T A -0.4970
83 V A 0.0000
84 S A -1.2803
85 D A -1.6847
86 G A -1.6800
87 Q A -1.9379
88 S A -1.2388
89 L A -1.0988
90 H A -1.0669
91 L A 0.0000
92 S A 0.3816
93 Q A 0.0000
94 Q A 0.4131
95 W A 0.0000
96 P A 0.0000
97 P A -0.0008
17 L B 2.2431
18 V B 2.7425
19 F B 1.7815
20 F B 1.0879
21 A B -0.0808
22 E B -1.6500
23 D B -1.1554
24 V B -0.3155
25 G B -1.1312
26 S B -1.0977
27 N B -1.9227
28 K B -1.7875
29 G B -0.5609
30 A B 0.4874
31 I B 2.0273
32 I B 1.4724
33 G B 1.2485
34 L B 2.1388
35 M B 1.5756
36 V B 1.6898
37 G B 0.6218
38 G B 0.7346
39 V B 1.4151
40 V B 2.6239
41 I B 2.8007
42 A B 1.5220
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Laboratory of Theory of Biopolymers 2018