| Chain sequence(s) |
L: KAFGYVDQPPFVSD
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:15)
[INFO] Main: Simulation completed successfully. (00:00:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 53 | K | L | -1.6914 | |
| 54 | A | L | 0.0852 | |
| 55 | F | L | 1.9082 | |
| 56 | G | L | 0.1831 | |
| 57 | Y | L | 0.7548 | |
| 58 | V | L | 1.5313 | |
| 59 | D | L | -1.5356 | |
| 60 | Q | L | -0.7609 | |
| 61 | P | L | -0.3645 | |
| 62 | P | L | 0.2179 | |
| 63 | F | L | 2.2449 | |
| 64 | V | L | 2.0795 | |
| 65 | S | L | -0.2215 | |
| 66 | D | L | -1.8280 |