Project name: query_structure

Status: done

Started: 2026-03-16 23:43:49
Settings
Chain sequence(s) A: GTCNTPGCTCAWPVCTRNGLPVCGETCVG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:06)
Show buried residues

Minimal score value
-1.3482
Maximal score value
1.4542
Average score
0.0673
Total score value
1.9507

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.2292
2 T A 0.0929
3 C A -0.3655
4 N A -1.1698
5 T A -1.0193
6 P A -0.8776
7 G A -1.0886
8 C A -0.6506
9 T A -0.3696
10 C A 0.3803
11 A A 0.8022
12 W A 1.4028
13 P A 0.8959
14 V A 1.2809
15 C A 0.0000
16 T A 0.0000
17 R A -0.8195
18 N A -1.3482
19 G A -0.4252
20 L A 1.0906
21 P A 0.8335
22 V A 1.4542
23 C A 0.4002
24 G A 0.0687
25 E A -0.1639
26 T A 0.2582
27 C A 0.0000
28 V A 0.9279
29 G A 0.1310
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018