| Chain sequence(s) |
A: GKGHKGH
C: GKGHKGH B: GKGHKGH E: GKGHKGH D: GKGHKGH G: GKGHKGH F: GKGHKGH H: GKGHKGH input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:40)
[INFO] Main: Simulation completed successfully. (00:02:42)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -1.8214 | |
| 2 | K | A | -2.5068 | |
| 3 | G | A | -3.5739 | |
| 4 | H | A | -4.8062 | |
| 5 | K | A | -5.3752 | |
| 6 | G | A | 0.0000 | |
| 7 | H | A | -4.9150 | |
| 1 | G | B | 0.0000 | |
| 2 | K | B | -5.1036 | |
| 3 | G | B | -4.3108 | |
| 4 | H | B | -4.4077 | |
| 5 | K | B | -3.5782 | |
| 6 | G | B | -2.3841 | |
| 7 | H | B | -2.5275 | |
| 1 | G | C | -3.4983 | |
| 2 | K | C | -3.8934 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | -5.2444 | |
| 6 | G | C | 0.0000 | |
| 7 | H | C | -3.4321 | |
| 1 | G | D | -4.4031 | |
| 2 | K | D | -5.2752 | |
| 3 | G | D | -4.4276 | |
| 4 | H | D | -4.3974 | |
| 5 | K | D | -3.8314 | |
| 6 | G | D | -2.6653 | |
| 7 | H | D | -2.9550 | |
| 1 | G | E | -2.6003 | |
| 2 | K | E | -3.5391 | |
| 3 | G | E | -2.6397 | |
| 4 | H | E | -3.1164 | |
| 5 | K | E | -4.3622 | |
| 6 | G | E | -3.6877 | |
| 7 | H | E | -3.4042 | |
| 1 | G | F | -2.0750 | |
| 2 | K | F | -3.3951 | |
| 3 | G | F | -3.8232 | |
| 4 | H | F | -4.5756 | |
| 5 | K | F | -5.0729 | |
| 6 | G | F | -4.5994 | |
| 7 | H | F | -3.7305 | |
| 1 | G | G | -1.6031 | |
| 2 | K | G | -2.6973 | |
| 3 | G | G | -2.9879 | |
| 4 | H | G | -3.7363 | |
| 5 | K | G | -3.3767 | |
| 6 | G | G | -2.2814 | |
| 7 | H | G | -2.4148 | |
| 1 | G | H | -3.2799 | |
| 2 | K | H | -3.8951 | |
| 3 | G | H | -4.6999 | |
| 4 | H | H | -4.3433 | |
| 5 | K | H | -4.3515 | |
| 6 | G | H | -2.8660 | |
| 7 | H | H | -2.0822 |