| Chain sequence(s) |
A: QVQLVESGGGSVQAGGSLRLSCTASGGSEYSYSTFSCGWFRQAPGQEREAVAAIASMGGLTYYADSVKGRFTISRDNAKNTCTLQMNNLKPEDTAIYYCAAVRGYFMRLPSSHNFRYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:15)
[INFO] Main: Simulation completed successfully. (00:01:16)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4766 | |
| 2 | V | A | -1.0597 | |
| 3 | Q | A | -1.2872 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.2144 | |
| 6 | E | A | -0.4750 | |
| 7 | S | A | -0.7951 | |
| 8 | G | A | -1.3316 | |
| 9 | G | A | -1.2183 | |
| 10 | G | A | -0.9349 | |
| 11 | S | A | -0.7067 | |
| 12 | V | A | -0.7531 | |
| 13 | Q | A | -1.7255 | |
| 14 | A | A | -1.8543 | |
| 15 | G | A | -1.7991 | |
| 16 | G | A | -1.4046 | |
| 17 | S | A | -1.4581 | |
| 18 | L | A | -1.2535 | |
| 19 | R | A | -2.1277 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.6579 | |
| 22 | C | A | 0.0000 | |
| 23 | T | A | -0.4954 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.8490 | |
| 26 | G | A | -1.3575 | |
| 27 | G | A | -1.5063 | |
| 28 | S | A | -1.3115 | |
| 29 | E | A | -2.0145 | |
| 30 | Y | A | -1.4643 | |
| 31 | S | A | -1.3470 | |
| 32 | Y | A | 0.0000 | |
| 33 | S | A | -0.8041 | |
| 34 | T | A | -0.5804 | |
| 35 | F | A | 0.0000 | |
| 36 | S | A | 0.0000 | |
| 37 | C | A | 0.0000 | |
| 38 | G | A | 0.0000 | |
| 39 | W | A | 0.0000 | |
| 40 | F | A | 0.0000 | |
| 41 | R | A | -1.3476 | |
| 42 | Q | A | -1.9457 | |
| 43 | A | A | -1.7835 | |
| 44 | P | A | -1.2485 | |
| 45 | G | A | -1.7392 | |
| 46 | Q | A | -2.8761 | |
| 47 | E | A | -3.4109 | |
| 48 | R | A | -2.9107 | |
| 49 | E | A | -1.9729 | |
| 50 | A | A | -0.6393 | |
| 51 | V | A | 0.0000 | |
| 52 | A | A | 0.0000 | |
| 53 | A | A | 0.0000 | |
| 54 | I | A | 0.0000 | |
| 55 | A | A | 0.0000 | |
| 56 | S | A | 0.0000 | |
| 57 | M | A | 0.9018 | |
| 58 | G | A | 0.0097 | |
| 59 | G | A | 0.1257 | |
| 60 | L | A | 0.8738 | |
| 61 | T | A | 0.3861 | |
| 62 | Y | A | 0.1589 | |
| 63 | Y | A | -0.5111 | |
| 64 | A | A | -1.3012 | |
| 65 | D | A | -2.3941 | |
| 66 | S | A | -1.8067 | |
| 67 | V | A | 0.0000 | |
| 68 | K | A | -2.5438 | |
| 69 | G | A | -1.8654 | |
| 70 | R | A | -1.6862 | |
| 71 | F | A | 0.0000 | |
| 72 | T | A | -0.7491 | |
| 73 | I | A | 0.0000 | |
| 74 | S | A | -0.5843 | |
| 75 | R | A | -1.0707 | |
| 76 | D | A | -1.8154 | |
| 77 | N | A | -1.8292 | |
| 78 | A | A | -1.5186 | |
| 79 | K | A | -2.2943 | |
| 80 | N | A | -1.6252 | |
| 81 | T | A | -1.1344 | |
| 82 | C | A | 0.0000 | |
| 83 | T | A | -0.7816 | |
| 84 | L | A | 0.0000 | |
| 85 | Q | A | -1.0798 | |
| 86 | M | A | 0.0000 | |
| 87 | N | A | -1.8140 | |
| 88 | N | A | -2.2695 | |
| 89 | L | A | 0.0000 | |
| 90 | K | A | -2.5447 | |
| 91 | P | A | -1.8607 | |
| 92 | E | A | -2.3001 | |
| 93 | D | A | 0.0000 | |
| 94 | T | A | -1.1015 | |
| 95 | A | A | 0.0000 | |
| 96 | I | A | -0.4851 | |
| 97 | Y | A | 0.0000 | |
| 98 | Y | A | 0.0000 | |
| 99 | C | A | 0.0000 | |
| 100 | A | A | 0.0000 | |
| 101 | A | A | 0.0000 | |
| 102 | V | A | -1.1010 | |
| 103 | R | A | -1.7378 | |
| 104 | G | A | 0.0990 | |
| 105 | Y | A | 1.7493 | |
| 106 | F | A | 1.9991 | |
| 107 | M | A | 0.0000 | |
| 108 | R | A | -0.5541 | |
| 109 | L | A | 0.6874 | |
| 110 | P | A | 0.0227 | |
| 111 | S | A | -0.7316 | |
| 112 | S | A | -1.2739 | |
| 113 | H | A | -1.6428 | |
| 114 | N | A | -1.6694 | |
| 115 | F | A | 0.0000 | |
| 116 | R | A | -2.1771 | |
| 117 | Y | A | -0.8554 | |
| 118 | W | A | -0.2873 | |
| 119 | G | A | -0.4328 | |
| 120 | Q | A | -1.1028 | |
| 121 | G | A | -0.7667 | |
| 122 | T | A | -0.9010 | |
| 123 | Q | A | -1.3022 | |
| 124 | V | A | 0.0000 | |
| 125 | T | A | -0.9282 | |
| 126 | V | A | 0.0000 | |
| 127 | S | A | -1.1365 | |
| 128 | S | A | -0.8477 |