| Chain sequence(s) |
A: FFGHKFG
C: FFGHKFG B: FFGHKFG E: FFGHKFG D: FFGHKFG G: FFGHKFG F: FFGHKFG I: FFGHKFG H: FFGHKFG K: FFGHKFG J: FFGHKFG M: FFGHKFG L: FFGHKFG O: FFGHKFG N: FFGHKFG P: FFGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,P |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:42)
[INFO] Main: Simulation completed successfully. (00:02:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.4931 | |
| 2 | F | A | 1.5837 | |
| 3 | G | A | 0.2267 | |
| 4 | H | A | -0.8261 | |
| 5 | K | A | -1.5433 | |
| 6 | F | A | 0.1260 | |
| 7 | G | A | -0.5070 | |
| 1 | F | B | 2.5375 | |
| 2 | F | B | 1.7690 | |
| 3 | G | B | 0.0764 | |
| 4 | H | B | -0.6927 | |
| 5 | K | B | -1.5596 | |
| 6 | F | B | 0.7877 | |
| 7 | G | B | -0.0018 | |
| 1 | F | C | 2.6575 | |
| 2 | F | C | 1.9873 | |
| 3 | G | C | 0.3062 | |
| 4 | H | C | -0.2886 | |
| 5 | K | C | -1.2485 | |
| 6 | F | C | 0.9225 | |
| 7 | G | C | 0.0872 | |
| 1 | F | D | 2.5118 | |
| 2 | F | D | 1.9233 | |
| 3 | G | D | 0.2007 | |
| 4 | H | D | -0.3685 | |
| 5 | K | D | -1.2384 | |
| 6 | F | D | 0.7995 | |
| 7 | G | D | 0.0766 | |
| 1 | F | E | 2.7093 | |
| 2 | F | E | 2.2766 | |
| 3 | G | E | 0.1024 | |
| 4 | H | E | -0.3114 | |
| 5 | K | E | -1.1884 | |
| 6 | F | E | 0.8374 | |
| 7 | G | E | 0.1601 | |
| 1 | F | F | 2.9165 | |
| 2 | F | F | 2.7043 | |
| 3 | G | F | 0.3530 | |
| 4 | H | F | -0.0979 | |
| 5 | K | F | -0.8865 | |
| 6 | F | F | 0.4214 | |
| 7 | G | F | -0.0470 | |
| 1 | F | G | 3.1715 | |
| 2 | F | G | 2.3497 | |
| 3 | G | G | 0.5695 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -1.1856 | |
| 6 | F | G | 0.8440 | |
| 7 | G | G | 0.0634 | |
| 1 | F | H | 3.6543 | |
| 2 | F | H | 2.3760 | |
| 3 | G | H | 0.7273 | |
| 4 | H | H | -0.1282 | |
| 5 | K | H | -1.2780 | |
| 6 | F | H | 0.9221 | |
| 7 | G | H | -0.0854 | |
| 1 | F | I | 3.4886 | |
| 2 | F | I | 2.1743 | |
| 3 | G | I | 0.6921 | |
| 4 | H | I | -0.3255 | |
| 5 | K | I | -1.1352 | |
| 6 | F | I | 0.9435 | |
| 7 | G | I | 0.0992 | |
| 1 | F | J | 3.0938 | |
| 2 | F | J | 1.9591 | |
| 3 | G | J | 0.3486 | |
| 4 | H | J | -0.3565 | |
| 5 | K | J | -1.3775 | |
| 6 | F | J | 0.7212 | |
| 7 | G | J | -0.1274 | |
| 1 | F | K | 3.0416 | |
| 2 | F | K | 2.3444 | |
| 3 | G | K | 0.3906 | |
| 4 | H | K | -0.2316 | |
| 5 | K | K | -1.1480 | |
| 6 | F | K | 0.9783 | |
| 7 | G | K | 0.0585 | |
| 1 | F | L | 2.8472 | |
| 2 | F | L | 2.5795 | |
| 3 | G | L | 0.7118 | |
| 4 | H | L | -0.1435 | |
| 5 | K | L | -1.2622 | |
| 6 | F | L | 0.6280 | |
| 7 | G | L | 0.0272 | |
| 1 | F | M | 3.1887 | |
| 2 | F | M | 2.3382 | |
| 3 | G | M | 0.3985 | |
| 4 | H | M | -0.3911 | |
| 5 | K | M | -1.2640 | |
| 6 | F | M | 0.7384 | |
| 7 | G | M | 0.0576 | |
| 1 | F | N | 3.6689 | |
| 2 | F | N | 0.0000 | |
| 3 | G | N | 0.5168 | |
| 4 | H | N | -0.1797 | |
| 5 | K | N | -1.5666 | |
| 6 | F | N | 0.5704 | |
| 7 | G | N | 0.0269 | |
| 1 | F | O | 3.3122 | |
| 2 | F | O | 2.4635 | |
| 3 | G | O | 0.0000 | |
| 4 | H | O | -0.0199 | |
| 5 | K | O | -0.9168 | |
| 6 | F | O | 1.0231 | |
| 7 | G | O | 0.0883 | |
| 1 | F | P | 3.6875 | |
| 2 | F | P | 2.6072 | |
| 3 | G | P | 0.9853 | |
| 4 | H | P | -0.2939 | |
| 5 | K | P | -1.1836 | |
| 6 | F | P | 0.4172 | |
| 7 | G | P | 0.1171 |