| Chain sequence(s) |
A: KGHKGHK
C: KGHKGHK B: KGHKGHK E: KGHKGHK D: KGHKGHK G: KGHKGHK F: KGHKGHK I: KGHKGHK H: KGHKGHK K: KGHKGHK J: KGHKGHK L: KGHKGHK input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:13:03)
[INFO] Main: Simulation completed successfully. (00:13:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | K | A | -3.8072 | |
| 2 | G | A | -2.7632 | |
| 3 | H | A | -2.4089 | |
| 4 | K | A | -2.4026 | |
| 5 | G | A | 0.0000 | |
| 6 | H | A | 0.0000 | |
| 7 | K | A | -3.2376 | |
| 1 | K | B | -3.1974 | |
| 2 | G | B | -2.4993 | |
| 3 | H | B | -2.6064 | |
| 4 | K | B | -3.0895 | |
| 5 | G | B | -2.8227 | |
| 6 | H | B | -2.5406 | |
| 7 | K | B | -2.8948 | |
| 1 | K | C | -3.2074 | |
| 2 | G | C | -2.5624 | |
| 3 | H | C | -2.6539 | |
| 4 | K | C | -3.0517 | |
| 5 | G | C | -2.6127 | |
| 6 | H | C | -3.1169 | |
| 7 | K | C | -3.2850 | |
| 1 | K | D | -3.4109 | |
| 2 | G | D | -2.7452 | |
| 3 | H | D | -2.5135 | |
| 4 | K | D | -2.7833 | |
| 5 | G | D | 0.0000 | |
| 6 | H | D | -3.2258 | |
| 7 | K | D | -3.3429 | |
| 1 | K | E | -3.4245 | |
| 2 | G | E | -2.4065 | |
| 3 | H | E | -1.9151 | |
| 4 | K | E | -2.1702 | |
| 5 | G | E | 0.0000 | |
| 6 | H | E | 0.0000 | |
| 7 | K | E | -3.1661 | |
| 1 | K | F | -3.2245 | |
| 2 | G | F | -2.3467 | |
| 3 | H | F | -1.8328 | |
| 4 | K | F | -2.1049 | |
| 5 | G | F | 0.0000 | |
| 6 | H | F | 0.0000 | |
| 7 | K | F | -3.1330 | |
| 1 | K | G | -3.4113 | |
| 2 | G | G | -2.3414 | |
| 3 | H | G | -1.8369 | |
| 4 | K | G | -2.2086 | |
| 5 | G | G | 0.0000 | |
| 6 | H | G | 0.0000 | |
| 7 | K | G | -3.1941 | |
| 1 | K | H | -3.4747 | |
| 2 | G | H | -2.6106 | |
| 3 | H | H | -2.2035 | |
| 4 | K | H | -2.5920 | |
| 5 | G | H | 0.0000 | |
| 6 | H | H | 0.0000 | |
| 7 | K | H | -3.3682 | |
| 1 | K | I | -3.0762 | |
| 2 | G | I | -2.3517 | |
| 3 | H | I | -2.3383 | |
| 4 | K | I | -2.5713 | |
| 5 | G | I | -2.3504 | |
| 6 | H | I | -2.4157 | |
| 7 | K | I | -3.0093 | |
| 1 | K | J | -3.0539 | |
| 2 | G | J | -2.4576 | |
| 3 | H | J | -1.9667 | |
| 4 | K | J | -2.3141 | |
| 5 | G | J | 0.0000 | |
| 6 | H | J | -2.2074 | |
| 7 | K | J | -2.8026 | |
| 1 | K | K | -3.7511 | |
| 2 | G | K | -2.8049 | |
| 3 | H | K | -2.0603 | |
| 4 | K | K | -2.2815 | |
| 5 | G | K | 0.0000 | |
| 6 | H | K | 0.0000 | |
| 7 | K | K | -3.0875 | |
| 1 | K | L | -3.7938 | |
| 2 | G | L | -2.6783 | |
| 3 | H | L | -2.0775 | |
| 4 | K | L | -2.1595 | |
| 5 | G | L | 0.0000 | |
| 6 | H | L | 0.0000 | |
| 7 | K | L | -3.2355 |