Project name: b734aeb230981da

Status: done

Started: 2026-02-12 14:44:11
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Chain sequence(s) A: KGHKGHK
C: KGHKGHK
B: KGHKGHK
E: KGHKGHK
D: KGHKGHK
G: KGHKGHK
F: KGHKGHK
I: KGHKGHK
H: KGHKGHK
K: KGHKGHK
J: KGHKGHK
L: KGHKGHK
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:13:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:13:06)
Show buried residues

Minimal score value
-3.8072
Maximal score value
0.0
Average score
-2.2213
Total score value
-186.5925

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -3.8072
2 G A -2.7632
3 H A -2.4089
4 K A -2.4026
5 G A 0.0000
6 H A 0.0000
7 K A -3.2376
1 K B -3.1974
2 G B -2.4993
3 H B -2.6064
4 K B -3.0895
5 G B -2.8227
6 H B -2.5406
7 K B -2.8948
1 K C -3.2074
2 G C -2.5624
3 H C -2.6539
4 K C -3.0517
5 G C -2.6127
6 H C -3.1169
7 K C -3.2850
1 K D -3.4109
2 G D -2.7452
3 H D -2.5135
4 K D -2.7833
5 G D 0.0000
6 H D -3.2258
7 K D -3.3429
1 K E -3.4245
2 G E -2.4065
3 H E -1.9151
4 K E -2.1702
5 G E 0.0000
6 H E 0.0000
7 K E -3.1661
1 K F -3.2245
2 G F -2.3467
3 H F -1.8328
4 K F -2.1049
5 G F 0.0000
6 H F 0.0000
7 K F -3.1330
1 K G -3.4113
2 G G -2.3414
3 H G -1.8369
4 K G -2.2086
5 G G 0.0000
6 H G 0.0000
7 K G -3.1941
1 K H -3.4747
2 G H -2.6106
3 H H -2.2035
4 K H -2.5920
5 G H 0.0000
6 H H 0.0000
7 K H -3.3682
1 K I -3.0762
2 G I -2.3517
3 H I -2.3383
4 K I -2.5713
5 G I -2.3504
6 H I -2.4157
7 K I -3.0093
1 K J -3.0539
2 G J -2.4576
3 H J -1.9667
4 K J -2.3141
5 G J 0.0000
6 H J -2.2074
7 K J -2.8026
1 K K -3.7511
2 G K -2.8049
3 H K -2.0603
4 K K -2.2815
5 G K 0.0000
6 H K 0.0000
7 K K -3.0875
1 K L -3.7938
2 G L -2.6783
3 H L -2.0775
4 K L -2.1595
5 G L 0.0000
6 H L 0.0000
7 K L -3.2355
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Laboratory of Theory of Biopolymers 2018