Project name: obj1 [mutate: KA65C, SD71C, NC74C, YG80C, SV85C, TI91C]

Status: done

Started: 2025-02-11 07:31:54
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Chain sequence(s) C: EVQLVESGGGLVQPGGSLRLSCAASDFTFRSYEMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAIYYCARLRDGFNKGFDYWGQGTLVTVSS
input PDB
Selected Chain(s) C
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YG80C,TI91C,SV85C,SD71C,KA65C,NC74C
Energy difference between WT (input) and mutated protein (by FoldX) 8.11285 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with C chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:24)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:01:20)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:45)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:46)
Show buried residues

Minimal score value
-3.3333
Maximal score value
1.8478
Average score
-0.5736
Total score value
-68.831

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E C -2.0063
2 V C -0.9169
3 Q C -1.2436
4 L C 0.0000
5 V C 0.5534
6 E C 0.1720
7 S C -0.4661
8 G C -0.8574
9 G C 0.0030
10 G C 0.9809
11 L C 1.5069
12 V C 0.0392
13 Q C -1.1182
14 P C -1.0293
15 G C -0.5486
16 G C -0.3944
17 S C -0.6934
18 L C -0.6928
19 R C -2.1384
20 L C 0.0000
21 S C -0.8390
22 C C 0.0000
23 A C -0.2433
24 A C 0.0000
25 S C -0.2028
26 D C 0.0000
27 F C 1.5444
28 T C 0.3074
29 F C 0.0000
30 R C -1.8473
31 S C -0.8277
32 Y C -1.2157
33 E C -1.1444
34 M C 0.0000
35 S C 0.0000
36 W C 0.0000
37 V C 0.0000
38 R C 0.0000
39 Q C -0.2267
40 A C -0.8501
41 P C -1.2009
42 G C -1.4347
43 K C -2.1363
44 G C -1.0612
45 L C 0.3896
46 E C -0.3994
47 W C 0.3698
48 V C 0.0000
49 S C 0.0000
50 A C 0.0000
51 I C 0.0000
52 S C -0.7700
53 G C -1.1425
54 S C -1.2970
55 G C -1.4101
56 G C -0.9256
57 S C -0.4754
58 T C -0.0152
59 Y C 0.9575
60 Y C 0.4051
61 A C -0.5590
62 D C -1.7035
63 S C -1.2042
64 V C 0.0000
65 A C -0.5589 mutated: KA65C
66 G C -0.5060
67 R C 0.0000
68 F C 0.0000
69 T C -0.7646
70 I C 0.0000
71 D C -2.2012 mutated: SD71C
72 R C -2.0045
73 D C -1.9266
74 C C -1.7558 mutated: NC74C
75 S C -1.4865
76 K C -2.0945
77 N C -1.4054
78 T C -1.3259
79 L C 0.0000
80 G C -1.4180 mutated: YG80C
81 L C 0.0000
82 Q C -1.4088
83 M C 0.0000
84 N C -0.3391
85 V C 0.6605 mutated: SV85C
86 L C 0.0000
87 R C -1.7773
88 A C -1.6678
89 E C -2.1338
90 D C 0.0000
91 I C 0.1045 mutated: TI91C
92 A C 0.0000
93 I C 1.1680
94 Y C 0.0000
95 Y C 0.6425
96 C C 0.0000
97 A C 0.0000
98 R C 0.0000
99 L C 0.0000
100 R C -3.1907
101 D C -3.3333
102 G C -2.0866
103 F C -1.2310
104 N C -2.4286
105 K C -3.1848
106 G C -1.9076
107 F C -0.9859
108 D C -1.0994
109 Y C -0.2104
110 W C 0.5562
111 G C -0.0696
112 Q C -0.8817
113 G C 0.1021
114 T C 0.5697
115 L C 1.8478
116 V C 0.0000
117 T C 0.5614
118 V C 0.0000
119 S C -0.6721
120 S C -0.9791
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Laboratory of Theory of Biopolymers 2018