| Chain sequence(s) |
A: FTGHKTF
C: FTGHKTF B: FTGHKTF E: FTGHKTF D: FTGHKTF G: FTGHKTF F: FTGHKTF I: FTGHKTF H: FTGHKTF K: FTGHKTF J: FTGHKTF L: FTGHKTF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:40)
[INFO] Main: Simulation completed successfully. (00:04:44)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 1.7714 | |
| 2 | T | A | 0.0000 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | 0.0000 | |
| 5 | K | A | -0.2471 | |
| 6 | T | A | 0.8761 | |
| 7 | F | A | 2.3516 | |
| 1 | F | B | 2.4181 | |
| 2 | T | B | 0.7003 | |
| 3 | G | B | 0.0000 | |
| 4 | H | B | 0.0000 | |
| 5 | K | B | 0.0291 | |
| 6 | T | B | 0.7516 | |
| 7 | F | B | 2.0344 | |
| 1 | F | C | 2.7097 | |
| 2 | T | C | 1.2492 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | 0.0000 | |
| 5 | K | C | 0.2563 | |
| 6 | T | C | 0.3887 | |
| 7 | F | C | 1.8930 | |
| 1 | F | D | 0.0000 | |
| 2 | T | D | 0.0000 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | -0.3902 | |
| 5 | K | D | 0.8535 | |
| 6 | T | D | 1.6322 | |
| 7 | F | D | 2.7221 | |
| 1 | F | E | 2.3941 | |
| 2 | T | E | 0.9501 | |
| 3 | G | E | -0.2443 | |
| 4 | H | E | 0.0000 | |
| 5 | K | E | -1.2278 | |
| 6 | T | E | 0.0000 | |
| 7 | F | E | 2.5173 | |
| 1 | F | F | 1.6844 | |
| 2 | T | F | 0.0000 | |
| 3 | G | F | -0.9532 | |
| 4 | H | F | -1.2643 | |
| 5 | K | F | -0.8232 | |
| 6 | T | F | 1.1451 | |
| 7 | F | F | 2.2811 | |
| 1 | F | G | 2.4001 | |
| 2 | T | G | 1.1234 | |
| 3 | G | G | -0.2990 | |
| 4 | H | G | 0.0000 | |
| 5 | K | G | -1.0939 | |
| 6 | T | G | 0.0000 | |
| 7 | F | G | 2.8728 | |
| 1 | F | H | 2.7226 | |
| 2 | T | H | 0.0000 | |
| 3 | G | H | -0.1419 | |
| 4 | H | H | 0.0000 | |
| 5 | K | H | 0.0248 | |
| 6 | T | H | 1.8706 | |
| 7 | F | H | 2.6312 | |
| 1 | F | I | 1.8201 | |
| 2 | T | I | 0.4450 | |
| 3 | G | I | -0.6226 | |
| 4 | H | I | 0.0000 | |
| 5 | K | I | -0.7025 | |
| 6 | T | I | 1.1374 | |
| 7 | F | I | 2.2843 | |
| 1 | F | J | 2.3321 | |
| 2 | T | J | 0.0000 | |
| 3 | G | J | -0.0374 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -0.4991 | |
| 6 | T | J | 0.7303 | |
| 7 | F | J | 1.9712 | |
| 1 | F | K | 2.1542 | |
| 2 | T | K | 1.0824 | |
| 3 | G | K | 0.0000 | |
| 4 | H | K | 0.0000 | |
| 5 | K | K | 0.8777 | |
| 6 | T | K | 1.1650 | |
| 7 | F | K | 2.0641 | |
| 1 | F | L | 0.8048 | |
| 2 | T | L | 0.0000 | |
| 3 | G | L | 0.0000 | |
| 4 | H | L | 0.0000 | |
| 5 | K | L | 1.3637 | |
| 6 | T | L | 1.6825 | |
| 7 | F | L | 2.5891 |