Project name: query_structure

Status: done

Started: 2026-03-16 20:33:17
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWTAPDAAFDSFAIAYPEWPPQGEAIVLTVPGSCRSYDLTGLKPGTEYFVVIYGVKGGSYSAPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-2.9391
Maximal score value
2.3847
Average score
-0.4505
Total score value
-40.0955

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.3445
2 P A 0.3099
3 A A 0.0865
4 P A 0.0000
5 K A -1.9871
6 N A -1.4817
7 L A -0.1230
8 V A 1.3021
9 V A 0.7275
10 S A -0.5837
11 R A -2.0182
12 V A -0.9845
13 T A -1.7133
14 E A -2.9391
15 D A -2.5762
16 S A -2.0447
17 A A 0.0000
18 R A -1.2328
19 L A 0.0000
20 S A -0.2143
21 W A 0.0000
22 T A -1.1373
23 A A -1.2767
24 P A -1.3923
25 D A -2.1421
26 A A -1.4113
27 A A -1.0038
28 F A 0.0000
29 D A -2.4737
30 S A -1.0575
31 F A 0.0000
32 A A 0.0000
33 I A 0.0000
34 A A 1.4496
35 Y A 1.1321
36 P A 0.1720
37 E A -0.7585
38 W A 0.2097
39 P A -0.4539
40 P A -1.2654
41 Q A -1.8919
42 G A -1.8097
43 E A -1.7449
44 A A -0.0063
45 I A 1.7966
46 V A 2.3847
47 L A 1.4028
48 T A 0.4102
49 V A 0.0000
50 P A -0.7752
51 G A 0.0000
52 S A -1.0619
53 C A -0.3929
54 R A -0.6333
55 S A -0.3408
56 Y A -0.6388
57 D A -1.9437
58 L A 0.0000
59 T A -1.4599
60 G A -1.4443
61 L A 0.0000
62 K A -2.8715
63 P A -2.4152
64 G A -1.7135
65 T A -1.5103
66 E A -0.5132
67 Y A 0.0000
68 F A 1.0941
69 V A 0.0000
70 V A 0.8806
71 I A 0.0000
72 Y A 0.7403
73 G A 0.0000
74 V A -0.2421
75 K A -1.2056
76 G A -1.2655
77 G A -0.9024
78 S A 0.0176
79 Y A 1.2768
80 S A 0.0000
81 A A 0.6018
82 P A 0.0065
83 L A -0.3324
84 S A 0.4165
85 A A 1.3801
86 I A 2.2890
87 F A 0.0000
88 T A -0.3999
89 T A -1.7407
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Laboratory of Theory of Biopolymers 2018