| Chain sequence(s) |
A: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA
C: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA B: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA E: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA D: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA G: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA F: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA I: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA H: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA K: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA J: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA L: DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVVIA input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:12:28)
[INFO] Main: Simulation completed successfully. (00:12:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | D | A | -2.6813 | |
| 2 | A | A | -1.7183 | |
| 3 | E | A | -1.2632 | |
| 4 | F | A | -0.0283 | |
| 5 | R | A | -1.7080 | |
| 6 | H | A | -2.0938 | |
| 7 | D | A | -1.8799 | |
| 8 | S | A | -1.5172 | |
| 9 | G | A | -1.1462 | |
| 10 | Y | A | -0.9507 | |
| 11 | E | A | -2.1686 | |
| 12 | V | A | -1.2807 | |
| 13 | H | A | -1.8523 | |
| 14 | H | A | -2.1878 | |
| 15 | Q | A | -1.5909 | |
| 16 | K | A | -2.0060 | |
| 17 | L | A | 0.0000 | |
| 18 | V | A | 1.3668 | |
| 19 | F | A | 0.0000 | |
| 20 | F | A | 1.8053 | |
| 21 | A | A | 0.1321 | |
| 22 | E | A | -1.2837 | |
| 23 | D | A | -0.4361 | |
| 24 | V | A | 0.9656 | |
| 25 | G | A | -0.0276 | |
| 26 | S | A | -0.8884 | |
| 27 | N | A | -1.2954 | |
| 28 | K | A | -2.3613 | |
| 29 | G | A | -1.0908 | |
| 30 | A | A | 0.2408 | |
| 31 | I | A | 2.2736 | |
| 32 | I | A | 1.7637 | |
| 33 | G | A | 1.1570 | |
| 34 | L | A | 1.4591 | |
| 35 | M | A | 1.7915 | |
| 36 | V | A | 1.4459 | |
| 37 | G | A | 0.4864 | |
| 38 | G | A | 0.6081 | |
| 39 | V | A | 1.4992 | |
| 40 | V | A | 2.3440 | |
| 41 | I | A | 1.5261 | |
| 42 | A | A | 0.8198 | |
| 1 | D | B | -3.5542 | |
| 2 | A | B | -2.1511 | |
| 3 | E | B | -1.7785 | |
| 4 | F | B | -0.4719 | |
| 5 | R | B | -1.7783 | |
| 6 | H | B | -2.0805 | |
| 7 | D | B | -1.8432 | |
| 8 | S | B | -1.1451 | |
| 9 | G | B | -1.0413 | |
| 10 | Y | B | 0.0000 | |
| 11 | E | B | -1.4972 | |
| 12 | V | B | 0.0000 | |
| 13 | H | B | -1.4236 | |
| 14 | H | B | -1.6342 | |
| 15 | Q | B | 0.0000 | |
| 16 | K | B | -1.5830 | |
| 17 | L | B | 0.0000 | |
| 18 | V | B | 0.8145 | |
| 19 | F | B | 0.0000 | |
| 20 | F | B | 1.1489 | |
| 21 | A | B | 0.0000 | |
| 22 | E | B | -1.2393 | |
| 23 | D | B | 0.0000 | |
| 24 | V | B | 0.7197 | |
| 25 | G | B | 0.2397 | |
| 26 | S | B | -0.7241 | |
| 27 | N | B | 0.0000 | |
| 28 | K | B | -2.7320 | |
| 29 | G | B | -1.2670 | |
| 30 | A | B | 0.0000 | |
| 31 | I | B | 1.4798 | |
| 32 | I | B | 0.0000 | |
| 33 | G | B | 1.0837 | |
| 34 | L | B | 0.0000 | |
| 35 | M | B | 1.5036 | |
| 36 | V | B | 0.0000 | |
| 37 | G | B | 0.4059 | |
| 38 | G | B | 0.3880 | |
| 39 | V | B | 0.0000 | |
| 40 | V | B | 1.7132 | |
| 41 | I | B | 0.0000 | |
| 42 | A | B | 0.7546 | |
| 1 | D | C | -3.7671 | |
| 2 | A | C | -2.3466 | |
| 3 | E | C | -1.8340 | |
| 4 | F | C | -0.3664 | |
| 5 | R | C | -1.7142 | |
| 6 | H | C | -1.4738 | |
| 7 | D | C | 0.0000 | |
| 8 | S | C | -0.8072 | |
| 9 | G | C | -0.7388 | |
| 10 | Y | C | 0.0000 | |
| 11 | E | C | -1.2502 | |
| 12 | V | C | 0.0000 | |
| 13 | H | C | -0.9849 | |
| 14 | H | C | -1.2061 | |
| 15 | Q | C | 0.0000 | |
| 16 | K | C | -1.2919 | |
| 17 | L | C | 0.0000 | |
| 18 | V | C | 0.5770 | |
| 19 | F | C | 0.0000 | |
| 20 | F | C | 0.6697 | |
| 21 | A | C | 0.0000 | |
| 22 | E | C | -1.1246 | |
| 23 | D | C | 0.0000 | |
| 24 | V | C | 0.7075 | |
| 25 | G | C | 0.3111 | |
| 26 | S | C | -0.5835 | |
| 27 | N | C | 0.0000 | |
| 28 | K | C | -2.1298 | |
| 29 | G | C | -1.2336 | |
| 30 | A | C | 0.0000 | |
| 31 | I | C | 1.2708 | |
| 32 | I | C | 0.0000 | |
| 33 | G | C | 0.6098 | |
| 34 | L | C | 0.0000 | |
| 35 | M | C | 0.8384 | |
| 36 | V | C | 0.0000 | |
| 37 | G | C | -0.0466 | |
| 38 | G | C | 0.0630 | |
| 39 | V | C | 0.0000 | |
| 40 | V | C | 1.2698 | |
| 41 | I | C | 0.0000 | |
| 42 | A | C | 0.4973 | |
| 1 | D | D | -3.8202 | |
| 2 | A | D | -2.4145 | |
| 3 | E | D | -2.0652 | |
| 4 | F | D | -0.4031 | |
| 5 | R | D | -1.1560 | |
| 6 | H | D | -1.2133 | |
| 7 | D | D | 0.0000 | |
| 8 | S | D | -0.6347 | |
| 9 | G | D | -0.6668 | |
| 10 | Y | D | 0.0000 | |
| 11 | E | D | -1.1246 | |
| 12 | V | D | 0.0000 | |
| 13 | H | D | -1.0217 | |
| 14 | H | D | -1.2761 | |
| 15 | Q | D | 0.0000 | |
| 16 | K | D | -1.0379 | |
| 17 | L | D | 0.0000 | |
| 18 | V | D | 0.5090 | |
| 19 | F | D | 0.0000 | |
| 20 | F | D | 0.6674 | |
| 21 | A | D | 0.0000 | |
| 22 | E | D | -1.1699 | |
| 23 | D | D | 0.0000 | |
| 24 | V | D | 0.7521 | |
| 25 | G | D | 0.2258 | |
| 26 | S | D | -0.5320 | |
| 27 | N | D | 0.0000 | |
| 28 | K | D | -2.5821 | |
| 29 | G | D | -1.2075 | |
| 30 | A | D | 0.0000 | |
| 31 | I | D | 1.0784 | |
| 32 | I | D | 0.0000 | |
| 33 | G | D | 0.6119 | |
| 34 | L | D | 0.0000 | |
| 35 | M | D | 0.8946 | |
| 36 | V | D | 0.0000 | |
| 37 | G | D | -0.0361 | |
| 38 | G | D | 0.0942 | |
| 39 | V | D | 0.0000 | |
| 40 | V | D | 1.1256 | |
| 41 | I | D | 0.0000 | |
| 42 | A | D | 0.4620 | |
| 1 | D | E | -3.8585 | |
| 2 | A | E | -2.3916 | |
| 3 | E | E | -1.6858 | |
| 4 | F | E | -0.2466 | |
| 5 | R | E | -1.1841 | |
| 6 | H | E | -1.0062 | |
| 7 | D | E | 0.0000 | |
| 8 | S | E | -0.7199 | |
| 9 | G | E | -0.6730 | |
| 10 | Y | E | 0.0000 | |
| 11 | E | E | -1.1054 | |
| 12 | V | E | 0.0000 | |
| 13 | H | E | -1.0597 | |
| 14 | H | E | -1.2340 | |
| 15 | Q | E | 0.0000 | |
| 16 | K | E | -1.0245 | |
| 17 | L | E | 0.0000 | |
| 18 | V | E | 0.4981 | |
| 19 | F | E | 0.0000 | |
| 20 | F | E | 0.5609 | |
| 21 | A | E | 0.0000 | |
| 22 | E | E | -1.1931 | |
| 23 | D | E | 0.0000 | |
| 24 | V | E | 0.8830 | |
| 25 | G | E | 0.4460 | |
| 26 | S | E | -0.4114 | |
| 27 | N | E | 0.0000 | |
| 28 | K | E | -2.0615 | |
| 29 | G | E | -1.1070 | |
| 30 | A | E | 0.0000 | |
| 31 | I | E | 1.1037 | |
| 32 | I | E | 0.0000 | |
| 33 | G | E | 0.6464 | |
| 34 | L | E | 0.0000 | |
| 35 | M | E | 0.7716 | |
| 36 | V | E | 0.0000 | |
| 37 | G | E | -0.0116 | |
| 38 | G | E | 0.0866 | |
| 39 | V | E | 0.0000 | |
| 40 | V | E | 1.1366 | |
| 41 | I | E | 0.0000 | |
| 42 | A | E | 0.4722 | |
| 1 | D | F | -3.8157 | |
| 2 | A | F | -2.1903 | |
| 3 | E | F | -1.6133 | |
| 4 | F | F | -0.0071 | |
| 5 | R | F | 0.0000 | |
| 6 | H | F | -1.0810 | |
| 7 | D | F | 0.0000 | |
| 8 | S | F | -0.7370 | |
| 9 | G | F | -0.6832 | |
| 10 | Y | F | 0.0000 | |
| 11 | E | F | -1.0902 | |
| 12 | V | F | 0.0000 | |
| 13 | H | F | -0.9885 | |
| 14 | H | F | -1.1996 | |
| 15 | Q | F | 0.0000 | |
| 16 | K | F | -1.0228 | |
| 17 | L | F | 0.0000 | |
| 18 | V | F | 0.4778 | |
| 19 | F | F | 0.0000 | |
| 20 | F | F | 0.5428 | |
| 21 | A | F | 0.0000 | |
| 22 | E | F | -1.2242 | |
| 23 | D | F | 0.0000 | |
| 24 | V | F | 1.2424 | |
| 25 | G | F | 0.5242 | |
| 26 | S | F | -0.3872 | |
| 27 | N | F | 0.0000 | |
| 28 | K | F | -2.3178 | |
| 29 | G | F | -1.1321 | |
| 30 | A | F | 0.0000 | |
| 31 | I | F | 1.1588 | |
| 32 | I | F | 0.0000 | |
| 33 | G | F | 0.0000 | |
| 34 | L | F | 0.0000 | |
| 35 | M | F | 0.8179 | |
| 36 | V | F | 0.0000 | |
| 37 | G | F | -0.0335 | |
| 38 | G | F | 0.0930 | |
| 39 | V | F | 0.0000 | |
| 40 | V | F | 1.1573 | |
| 41 | I | F | 0.0000 | |
| 42 | A | F | 0.4816 | |
| 1 | D | G | -3.8051 | |
| 2 | A | G | -2.2401 | |
| 3 | E | G | -1.5659 | |
| 4 | F | G | -0.0853 | |
| 5 | R | G | -1.0459 | |
| 6 | H | G | -1.1015 | |
| 7 | D | G | -1.0722 | |
| 8 | S | G | -0.8368 | |
| 9 | G | G | -0.7191 | |
| 10 | Y | G | 0.0000 | |
| 11 | E | G | -1.0392 | |
| 12 | V | G | 0.0000 | |
| 13 | H | G | -0.9436 | |
| 14 | H | G | -1.1075 | |
| 15 | Q | G | 0.0000 | |
| 16 | K | G | -1.1842 | |
| 17 | L | G | 0.0000 | |
| 18 | V | G | 0.5167 | |
| 19 | F | G | 0.0000 | |
| 20 | F | G | 0.7775 | |
| 21 | A | G | 0.0000 | |
| 22 | E | G | -1.0915 | |
| 23 | D | G | 0.0000 | |
| 24 | V | G | 0.8821 | |
| 25 | G | G | 0.3933 | |
| 26 | S | G | -0.4825 | |
| 27 | N | G | 0.0000 | |
| 28 | K | G | -2.4621 | |
| 29 | G | G | -1.1915 | |
| 30 | A | G | 0.0000 | |
| 31 | I | G | 1.1008 | |
| 32 | I | G | 0.0000 | |
| 33 | G | G | 0.0000 | |
| 34 | L | G | 0.0000 | |
| 35 | M | G | 0.7389 | |
| 36 | V | G | 0.0000 | |
| 37 | G | G | -0.0455 | |
| 38 | G | G | 0.0826 | |
| 39 | V | G | 0.0000 | |
| 40 | V | G | 1.1826 | |
| 41 | I | G | 0.0000 | |
| 42 | A | G | 0.4939 | |
| 1 | D | H | -3.7535 | |
| 2 | A | H | -2.0829 | |
| 3 | E | H | -1.7462 | |
| 4 | F | H | -0.2399 | |
| 5 | R | H | -1.1752 | |
| 6 | H | H | -1.2340 | |
| 7 | D | H | -1.0967 | |
| 8 | S | H | -0.8289 | |
| 9 | G | H | -0.7324 | |
| 10 | Y | H | 0.0000 | |
| 11 | E | H | -1.0527 | |
| 12 | V | H | 0.0000 | |
| 13 | H | H | -0.9636 | |
| 14 | H | H | -1.2263 | |
| 15 | Q | H | 0.0000 | |
| 16 | K | H | -1.2802 | |
| 17 | L | H | 0.0000 | |
| 18 | V | H | 0.4265 | |
| 19 | F | H | 0.0000 | |
| 20 | F | H | 0.9094 | |
| 21 | A | H | 0.0000 | |
| 22 | E | H | -1.1669 | |
| 23 | D | H | 0.0000 | |
| 24 | V | H | 0.7632 | |
| 25 | G | H | 0.2608 | |
| 26 | S | H | -0.6244 | |
| 27 | N | H | 0.0000 | |
| 28 | K | H | -2.2750 | |
| 29 | G | H | -1.2002 | |
| 30 | A | H | 0.0000 | |
| 31 | I | H | 1.1545 | |
| 32 | I | H | 0.0000 | |
| 33 | G | H | 0.0000 | |
| 34 | L | H | 0.0000 | |
| 35 | M | H | 0.7073 | |
| 36 | V | H | 0.0000 | |
| 37 | G | H | -0.0408 | |
| 38 | G | H | 0.1034 | |
| 39 | V | H | 0.0000 | |
| 40 | V | H | 1.2078 | |
| 41 | I | H | 0.0000 | |
| 42 | A | H | 0.4993 | |
| 1 | D | I | -3.5040 | |
| 2 | A | I | -2.0390 | |
| 3 | E | I | -1.6828 | |
| 4 | F | I | -0.3341 | |
| 5 | R | I | -1.1114 | |
| 6 | H | I | -1.1301 | |
| 7 | D | I | -1.0709 | |
| 8 | S | I | -0.7630 | |
| 9 | G | I | -0.7255 | |
| 10 | Y | I | 0.0000 | |
| 11 | E | I | -1.0495 | |
| 12 | V | I | 0.0000 | |
| 13 | H | I | -1.0100 | |
| 14 | H | I | -1.2240 | |
| 15 | Q | I | 0.0000 | |
| 16 | K | I | -1.3391 | |
| 17 | L | I | 0.0000 | |
| 18 | V | I | 0.4070 | |
| 19 | F | I | 0.0000 | |
| 20 | F | I | 0.7385 | |
| 21 | A | I | 0.0000 | |
| 22 | E | I | -1.2794 | |
| 23 | D | I | 0.0000 | |
| 24 | V | I | 0.6951 | |
| 25 | G | I | 0.1555 | |
| 26 | S | I | -0.5771 | |
| 27 | N | I | 0.0000 | |
| 28 | K | I | -2.5561 | |
| 29 | G | I | -1.1886 | |
| 30 | A | I | 0.0000 | |
| 31 | I | I | 1.0721 | |
| 32 | I | I | 0.0000 | |
| 33 | G | I | 0.6247 | |
| 34 | L | I | 0.0000 | |
| 35 | M | I | 0.7847 | |
| 36 | V | I | 0.0000 | |
| 37 | G | I | -0.0382 | |
| 38 | G | I | 0.1036 | |
| 39 | V | I | 0.0000 | |
| 40 | V | I | 1.2203 | |
| 41 | I | I | 0.0000 | |
| 42 | A | I | 0.5004 | |
| 1 | D | J | -3.6377 | |
| 2 | A | J | -2.3363 | |
| 3 | E | J | -1.9999 | |
| 4 | F | J | -0.5317 | |
| 5 | R | J | -1.2893 | |
| 6 | H | J | -1.0927 | |
| 7 | D | J | 0.0000 | |
| 8 | S | J | -0.7953 | |
| 9 | G | J | -0.7522 | |
| 10 | Y | J | 0.0000 | |
| 11 | E | J | -1.1513 | |
| 12 | V | J | 0.0000 | |
| 13 | H | J | -1.1331 | |
| 14 | H | J | -1.4095 | |
| 15 | Q | J | 0.0000 | |
| 16 | K | J | -1.2337 | |
| 17 | L | J | 0.0000 | |
| 18 | V | J | 0.4555 | |
| 19 | F | J | 0.0000 | |
| 20 | F | J | 0.8609 | |
| 21 | A | J | 0.0000 | |
| 22 | E | J | -1.6616 | |
| 23 | D | J | 0.0000 | |
| 24 | V | J | 0.7951 | |
| 25 | G | J | 0.2142 | |
| 26 | S | J | -0.5373 | |
| 27 | N | J | 0.0000 | |
| 28 | K | J | -1.9890 | |
| 29 | G | J | -1.0896 | |
| 30 | A | J | 0.0000 | |
| 31 | I | J | 1.1969 | |
| 32 | I | J | 0.0000 | |
| 33 | G | J | 0.6676 | |
| 34 | L | J | 0.0000 | |
| 35 | M | J | 0.7321 | |
| 36 | V | J | 0.0000 | |
| 37 | G | J | 0.0170 | |
| 38 | G | J | 0.1538 | |
| 39 | V | J | 0.0000 | |
| 40 | V | J | 1.3481 | |
| 41 | I | J | 0.0000 | |
| 42 | A | J | 0.4943 | |
| 1 | D | K | -3.7831 | |
| 2 | A | K | -2.8469 | |
| 3 | E | K | -3.3367 | |
| 4 | F | K | -1.3375 | |
| 5 | R | K | -2.1405 | |
| 6 | H | K | -2.1199 | |
| 7 | D | K | -2.0264 | |
| 8 | S | K | -1.3948 | |
| 9 | G | K | -1.0516 | |
| 10 | Y | K | 0.0000 | |
| 11 | E | K | -0.7820 | |
| 12 | V | K | 0.0000 | |
| 13 | H | K | -1.1283 | |
| 14 | H | K | -1.6792 | |
| 15 | Q | K | 0.0000 | |
| 16 | K | K | -1.4632 | |
| 17 | L | K | 0.0000 | |
| 18 | V | K | 1.0130 | |
| 19 | F | K | 0.0000 | |
| 20 | F | K | 1.2494 | |
| 21 | A | K | 0.0000 | |
| 22 | E | K | -1.9593 | |
| 23 | D | K | -1.5422 | |
| 24 | V | K | 0.2189 | |
| 25 | G | K | -0.2184 | |
| 26 | S | K | -1.1743 | |
| 27 | N | K | 0.0000 | |
| 28 | K | K | -2.5015 | |
| 29 | G | K | -1.1911 | |
| 30 | A | K | 0.0000 | |
| 31 | I | K | 1.5772 | |
| 32 | I | K | 0.0000 | |
| 33 | G | K | 1.1617 | |
| 34 | L | K | 0.0000 | |
| 35 | M | K | 1.0534 | |
| 36 | V | K | 0.0000 | |
| 37 | G | K | 0.1284 | |
| 38 | G | K | 0.3467 | |
| 39 | V | K | 0.0000 | |
| 40 | V | K | 1.7573 | |
| 41 | I | K | 0.0000 | |
| 42 | A | K | 0.7753 | |
| 1 | D | L | -3.1399 | |
| 2 | A | L | -2.3556 | |
| 3 | E | L | -3.0057 | |
| 4 | F | L | -1.3734 | |
| 5 | R | L | -3.0779 | |
| 6 | H | L | -2.9341 | |
| 7 | D | L | -3.0082 | |
| 8 | S | L | -1.8906 | |
| 9 | G | L | -0.9440 | |
| 10 | Y | L | -0.2897 | |
| 11 | E | L | -0.5687 | |
| 12 | V | L | 0.7661 | |
| 13 | H | L | -0.9742 | |
| 14 | H | L | -1.9541 | |
| 15 | Q | L | -1.9111 | |
| 16 | K | L | -1.9019 | |
| 17 | L | L | 0.1251 | |
| 18 | V | L | 1.3701 | |
| 19 | F | L | 2.5072 | |
| 20 | F | L | 1.8458 | |
| 21 | A | L | -0.1445 | |
| 22 | E | L | -2.3118 | |
| 23 | D | L | -2.2553 | |
| 24 | V | L | 0.0900 | |
| 25 | G | L | -0.6911 | |
| 26 | S | L | -1.5288 | |
| 27 | N | L | -2.5820 | |
| 28 | K | L | -2.8842 | |
| 29 | G | L | -1.3847 | |
| 30 | A | L | -0.2663 | |
| 31 | I | L | 2.0537 | |
| 32 | I | L | 1.9375 | |
| 33 | G | L | 1.3930 | |
| 34 | L | L | 1.2703 | |
| 35 | M | L | 1.1405 | |
| 36 | V | L | 0.7320 | |
| 37 | G | L | 0.2680 | |
| 38 | G | L | 0.1271 | |
| 39 | V | L | 1.4299 | |
| 40 | V | L | 2.5558 | |
| 41 | I | L | 1.9347 | |
| 42 | A | L | 0.9345 |