| Chain sequence(s) |
B: QRTESIIARALYYDLISGRKKRRQRRRPPQ
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:35)
[INFO] Main: Simulation completed successfully. (00:01:35)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | B | -2.4233 | |
| 2 | R | B | -2.5365 | |
| 3 | T | B | -1.5573 | |
| 4 | E | B | -2.1049 | |
| 5 | S | B | -1.1690 | |
| 6 | I | B | 0.3581 | |
| 7 | I | B | 1.5214 | |
| 8 | A | B | 0.5444 | |
| 9 | R | B | 0.1478 | |
| 10 | A | B | 1.0906 | |
| 11 | L | B | 2.0860 | |
| 12 | Y | B | 2.3381 | |
| 13 | Y | B | 1.6837 | |
| 14 | D | B | -0.3554 | |
| 15 | L | B | 0.3992 | |
| 16 | I | B | 0.4158 | |
| 17 | S | B | -1.1392 | |
| 18 | G | B | -2.5703 | |
| 19 | R | B | -4.2485 | |
| 20 | K | B | -5.1827 | |
| 21 | K | B | -5.5091 | |
| 22 | R | B | -6.3289 | |
| 23 | R | B | -6.5774 | |
| 24 | Q | B | -6.0636 | |
| 25 | R | B | -5.9762 | |
| 26 | R | B | -5.5110 | |
| 27 | R | B | -4.5559 | |
| 28 | P | B | -2.7088 | |
| 29 | P | B | -2.0822 | |
| 30 | Q | B | -1.6576 |