Project name: Pep5-Mut8-KLVFF

Status: done

Started: 2026-02-11 06:09:13
Settings
Chain sequence(s) A: RGDGWKPFVIDATVLVALHTGIGTIKLVFF
input PDB
Selected Chain(s) A
Distance of aggregation 5 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-1.962
Maximal score value
2.6258
Average score
0.5524
Total score value
16.5719

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.9303
2 G A -1.1423
3 D A -1.9620
4 G A -0.5800
5 W A 0.7963
6 K A -1.5289
7 P A -0.1744
8 F A 2.2216
9 V A 2.5079
10 I A 2.0129
11 D A -1.4082
12 A A -0.2632
13 T A 0.3784
14 V A 1.6276
15 L A 2.1464
16 V A 2.0746
17 A A 0.6991
18 L A 1.3762
19 H A -0.7170
20 T A -0.2900
21 G A -0.0177
22 I A 0.9440
23 G A -0.0311
24 T A 0.2731
25 I A 1.6841
26 K A -1.0372
27 L A 1.5638
28 V A 2.4322
29 F A 2.6258
30 F A 2.2902
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Laboratory of Theory of Biopolymers 2018