Project name: query_structure

Status: done

Started: 2026-03-16 23:30:37
Settings
Chain sequence(s) A: GSCVPVDQPCSLNTQPCCDDATCTQERNENGHTVYYCRA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:15)
Show buried residues

Minimal score value
-3.7089
Maximal score value
0.6562
Average score
-1.5219
Total score value
-59.3538

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.6217
2 S A -0.5182
3 C A -0.6100
4 V A -1.0048
5 P A -1.3145
6 V A -1.8691
7 D A -2.4690
8 Q A -1.7857
9 P A -1.1713
10 C A 0.0000
11 S A 0.0455
12 L A 0.6562
13 N A -0.8797
14 T A -0.7969
15 Q A -1.2816
16 P A -1.1054
17 C A 0.0000
18 C A -1.9032
19 D A -2.7247
20 D A -2.8091
21 A A -2.0936
22 T A -1.2935
23 C A -0.4997
24 T A -0.7513
25 Q A -1.7693
26 E A -2.7925
27 R A -3.7089
28 N A -3.2685
29 E A -3.2667
30 N A -2.9986
31 G A -2.6921
32 H A -2.5703
33 T A -1.8945
34 V A -1.2053
35 Y A -0.5610
36 Y A -1.3270
37 C A 0.0000
38 R A -2.5818
39 A A -1.9160
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Laboratory of Theory of Biopolymers 2018