| Chain sequence(s) |
A: GSCVPVDQPCSLNTQPCCDDATCTQERNENGHTVYYCRA
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:14)
[INFO] Main: Simulation completed successfully. (00:00:15)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -0.6217 | |
| 2 | S | A | -0.5182 | |
| 3 | C | A | -0.6100 | |
| 4 | V | A | -1.0048 | |
| 5 | P | A | -1.3145 | |
| 6 | V | A | -1.8691 | |
| 7 | D | A | -2.4690 | |
| 8 | Q | A | -1.7857 | |
| 9 | P | A | -1.1713 | |
| 10 | C | A | 0.0000 | |
| 11 | S | A | 0.0455 | |
| 12 | L | A | 0.6562 | |
| 13 | N | A | -0.8797 | |
| 14 | T | A | -0.7969 | |
| 15 | Q | A | -1.2816 | |
| 16 | P | A | -1.1054 | |
| 17 | C | A | 0.0000 | |
| 18 | C | A | -1.9032 | |
| 19 | D | A | -2.7247 | |
| 20 | D | A | -2.8091 | |
| 21 | A | A | -2.0936 | |
| 22 | T | A | -1.2935 | |
| 23 | C | A | -0.4997 | |
| 24 | T | A | -0.7513 | |
| 25 | Q | A | -1.7693 | |
| 26 | E | A | -2.7925 | |
| 27 | R | A | -3.7089 | |
| 28 | N | A | -3.2685 | |
| 29 | E | A | -3.2667 | |
| 30 | N | A | -2.9986 | |
| 31 | G | A | -2.6921 | |
| 32 | H | A | -2.5703 | |
| 33 | T | A | -1.8945 | |
| 34 | V | A | -1.2053 | |
| 35 | Y | A | -0.5610 | |
| 36 | Y | A | -1.3270 | |
| 37 | C | A | 0.0000 | |
| 38 | R | A | -2.5818 | |
| 39 | A | A | -1.9160 |