| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVASYWMEWYRQAPGKEREWVAAIWSYGGNTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVHVGAGYTGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2977 | |
| 2 | V | A | -0.4583 | |
| 3 | Q | A | -0.9953 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.5358 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6857 | |
| 8 | G | A | -1.0437 | |
| 9 | G | A | -0.8662 | |
| 10 | G | A | -0.1196 | |
| 11 | L | A | 0.9228 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.3355 | |
| 14 | A | A | -1.5563 | |
| 15 | G | A | -1.4728 | |
| 16 | G | A | -1.0391 | |
| 17 | S | A | -1.4576 | |
| 18 | L | A | -1.0963 | |
| 19 | R | A | -2.3040 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5158 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2962 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.7031 | |
| 26 | G | A | -0.8885 | |
| 27 | F | A | -0.3545 | |
| 28 | P | A | -0.7523 | |
| 29 | V | A | 0.0000 | |
| 30 | A | A | -0.2200 | |
| 31 | S | A | 0.3312 | |
| 32 | Y | A | 0.6975 | |
| 33 | W | A | 0.4714 | |
| 34 | M | A | 0.0000 | |
| 35 | E | A | -0.0043 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.3940 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.3281 | |
| 40 | A | A | -2.1766 | |
| 41 | P | A | -1.5231 | |
| 42 | G | A | -2.0624 | |
| 43 | K | A | -3.5341 | |
| 44 | E | A | -3.9403 | |
| 45 | R | A | -3.5039 | |
| 46 | E | A | -2.1082 | |
| 47 | W | A | -0.7263 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | W | A | 0.5073 | |
| 53 | S | A | 0.0000 | |
| 54 | Y | A | 1.0767 | |
| 55 | G | A | -0.1512 | |
| 56 | G | A | -0.4372 | |
| 57 | N | A | -0.7982 | |
| 58 | T | A | -0.2140 | |
| 59 | W | A | 0.0490 | |
| 60 | Y | A | -0.5831 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.3416 | |
| 63 | S | A | -1.7725 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5521 | |
| 66 | G | A | -1.8771 | |
| 67 | R | A | -1.7682 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.9715 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.7601 | |
| 72 | R | A | -1.2953 | |
| 73 | D | A | -1.9581 | |
| 74 | N | A | -2.3434 | |
| 75 | A | A | -1.7389 | |
| 76 | K | A | -2.4792 | |
| 77 | N | A | -1.9079 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.7830 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.6173 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.9951 | |
| 85 | S | A | -1.4567 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.5988 | |
| 88 | P | A | -2.0209 | |
| 89 | E | A | -2.4060 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0245 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7443 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.3888 | |
| 96 | C | A | 0.0000 | |
| 97 | A | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | H | A | -0.4121 | |
| 100 | V | A | 0.4238 | |
| 101 | G | A | -0.1891 | |
| 102 | A | A | -0.0360 | |
| 103 | G | A | -0.1021 | |
| 104 | Y | A | 0.2774 | |
| 105 | T | A | -0.1251 | |
| 106 | G | A | -0.3211 | |
| 107 | Q | A | -1.1260 | |
| 108 | G | A | -0.6437 | |
| 109 | T | A | 0.0000 | |
| 110 | Q | A | -1.2039 | |
| 111 | V | A | 0.0000 | |
| 112 | T | A | -0.3945 | |
| 113 | V | A | 0.0000 | |
| 114 | S | A | -0.8235 |