Project name: query_structure

Status: done

Started: 2026-03-17 00:37:21
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVASYWMEWYRQAPGKEREWVAAIWSYGGNTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCAVHVGAGYTGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:24)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:24)
Show buried residues

Minimal score value
-3.9403
Maximal score value
1.0767
Average score
-0.7266
Total score value
-82.829

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.2977
2 V A -0.4583
3 Q A -0.9953
4 L A 0.0000
5 V A 0.5358
6 E A 0.0000
7 S A -0.6857
8 G A -1.0437
9 G A -0.8662
10 G A -0.1196
11 L A 0.9228
12 V A 0.0000
13 Q A -1.3355
14 A A -1.5563
15 G A -1.4728
16 G A -1.0391
17 S A -1.4576
18 L A -1.0963
19 R A -2.3040
20 L A 0.0000
21 S A -0.5158
22 C A 0.0000
23 A A -0.2962
24 A A 0.0000
25 S A -0.7031
26 G A -0.8885
27 F A -0.3545
28 P A -0.7523
29 V A 0.0000
30 A A -0.2200
31 S A 0.3312
32 Y A 0.6975
33 W A 0.4714
34 M A 0.0000
35 E A -0.0043
36 W A 0.0000
37 Y A -0.3940
38 R A 0.0000
39 Q A -2.3281
40 A A -2.1766
41 P A -1.5231
42 G A -2.0624
43 K A -3.5341
44 E A -3.9403
45 R A -3.5039
46 E A -2.1082
47 W A -0.7263
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 W A 0.5073
53 S A 0.0000
54 Y A 1.0767
55 G A -0.1512
56 G A -0.4372
57 N A -0.7982
58 T A -0.2140
59 W A 0.0490
60 Y A -0.5831
61 A A 0.0000
62 D A -2.3416
63 S A -1.7725
64 V A 0.0000
65 K A -2.5521
66 G A -1.8771
67 R A -1.7682
68 F A 0.0000
69 T A -0.9715
70 I A 0.0000
71 S A -0.7601
72 R A -1.2953
73 D A -1.9581
74 N A -2.3434
75 A A -1.7389
76 K A -2.4792
77 N A -1.9079
78 T A 0.0000
79 V A 0.0000
80 Y A -0.7830
81 L A 0.0000
82 Q A -1.6173
83 M A 0.0000
84 N A -1.9951
85 S A -1.4567
86 L A 0.0000
87 K A -2.5988
88 P A -2.0209
89 E A -2.4060
90 D A 0.0000
91 T A -1.0245
92 A A 0.0000
93 V A -0.7443
94 Y A 0.0000
95 Y A -0.3888
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A -0.4121
100 V A 0.4238
101 G A -0.1891
102 A A -0.0360
103 G A -0.1021
104 Y A 0.2774
105 T A -0.1251
106 G A -0.3211
107 Q A -1.1260
108 G A -0.6437
109 T A 0.0000
110 Q A -1.2039
111 V A 0.0000
112 T A -0.3945
113 V A 0.0000
114 S A -0.8235
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018